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AT5G07830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucuronidase 2
Curator
Summary (TAIR10)
Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be membrane-associated.
Computational
Description (TAIR10)
glucuronidase 2 (GUS2); FUNCTIONS IN: beta-glucuronidase activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: glucuronidase 1 (TAIR:AT5G61250.1); Has 380 Blast hits to 370 proteins in 68 species: Archae - 0; Bacteria - 29; Metazoa - 190; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G07830-MONOMERCAZy:GH79EC:3.2.-.-eggNOG:ENOG410IHNVeggNOG:ENOG410YDJWEMBL:AB005249EMBL:AL133421
EMBL:BT015345EMBL:BT015800EMBL:CP002688EnsemblPlants:AT5G07830EnsemblPlants:AT5G07830.1entrez:830676GeneID:830676
Genevisible:Q9FF10GO:GO:0004566GO:GO:0005576GO:GO:0005618GO:GO:0005765GO:GO:0009505GO:GO:0009826
Gramene:AT5G07830.1hmmpanther:PTHR14363hmmpanther:PTHR14363:SF17HOGENOM:HOG000239590InParanoid:Q9FF10InterPro:IPR005199InterPro:IPR017853
iPTMnet:Q9FF10KEGG:ath:AT5G07830OMA:IYDVGNLPANTHER:PTHR14363PaxDb:Q9FF10Pfam:PF03662Pfam:Q9FF10
PhylomeDB:Q9FF10PIR:T45608PRIDE:Q9FF10PRO:PR:Q9FF10ProteinModelPortal:Q9FF10Proteomes:UP000006548RefSeq:NP_196400.2
STRING:3702.AT5G07830.1SUPFAM:SSF51445TAIR:AT5G07830tair10-symbols:AtGUS2tair10-symbols:GUS2UniGene:At.48994UniGene:At.620
UniProt:Q9FF10
Coordinates (TAIR10) chr5:+:2504168..2506567
Molecular Weight (calculated) 60253.60 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.14
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFRVCVIVV FLGCLLLVPE KTMAQEMKRA SIVIQGARRV CETDENFVCA TLDWWPHDKC NYDQCPWGYS SVINMDLTRP LLTKAIKAFK PLRIRIGGSL
101: QDQVIYDVGN LKTPCRPFQK MNSGLFGFSK GCLHMKRWDE LNSFLTATGA VVTFGLNALR GRHKLRGKAW GGAWDHINTQ DFLNYTVSKG YVIDSWEFGN
201: ELSGSGVGAS VSAELYGKDL IVLKDVINKV YKNSWLHKPI LVAPGGFYEQ QWYTKLLEIS GPSVVDVVTH HIYNLGSGND PALVKKIMDP SYLSQVSKTF
301: KDVNQTIQEH GPWASPWVGE SGGAYNSGGR HVSDTFIDSF WYLDQLGMSA RHNTKVYCRQ TLVGGFYGLL EKGTFVPNPD YYSALLWHRL MGKGVLAVQT
401: DGPPQLRVYA HCSKGRAGVT LLLINLSNQS DFTVSVSNGI NVVLNAESRK KKSLLDTLKR PFSWIGSKAS DGYLNREEYH LTPENGVLRS KTMVLNGKSL
501: KPTATGDIPS LEPVLRSVNS PLNVLPLSMS FIVLPNFDAS ACS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)