suba logo
AT5G07810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0553eggNOG:KOG1000EMBL:CP002688EnsemblPlants:AT5G07810
EnsemblPlants:AT5G07810.1entrez:830674Gene3D:3.40.50.300GeneID:830674
GO:GO:0003676GO:GO:0004386GO:GO:0004519GO:GO:0005524
Gramene:AT5G07810.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF741InParanoid:F4K856
InterPro:IPR000330InterPro:IPR001650InterPro:IPR002711InterPro:IPR014001
InterPro:IPR027417KEGG:ath:AT5G07810OMA:CNLNAQEPaxDb:F4K856
Pfam:PF00176Pfam:PF00271Pfam:PF01844Pfscan:PS51192
Pfscan:PS51194PRIDE:F4K856PROSITE:PS51192PROSITE:PS51194
ProteinModelPortal:F4K856Proteomes:UP000006548RefSeq:NP_196398.2SMART:SM00487
SMART:SM00490STRING:3702.AT5G07810.1SUPFAM:SSF52540TAIR:AT5G07810
UniGene:At.32666UniProt:F4K856
Coordinates (TAIR10) chr5:-:2491412..2498484
Molecular Weight (calculated) 134326.00 Da
IEP (calculated) 6.84
GRAVY (calculated) -0.52
Length 1190 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEVSEEQRRR DEATRLAFAE KRKQSFDSSE NPQRQQDFRL AKCRKLDGSN DVCPQEGYRN YEPVRVLSTS VPEKFRVRLE ICSPDSFSVT PVQLQGFRCP
0101: EEQECLRQLR KILSDAIPLH YTQNDDGGKA GVYKIRDYNK VSGCLKRSKS VEVEGVPWKT LAVVEKLSQS YISGKWQPCL PEHYTEEKVE QLIETLPRKL
0201: VNALLPFQLD GLRFGLRRGG RCFIADEMGL GKTLQAIAIA GCFISEGSIL VVCPAVLRFT WAEELERWLP SCLPSDVHLV FGHQDNPAYL PRWPKVVVIS
0301: YKMLQHLRTT MLEREWALLI VDESHHLRCS KKKSDPPEIK TVLDVAEKVK HIILLSGTPS VSRPFDIFHQ INMLWPGLLG KDKYEFAKTY CEVGLVRGIQ
0401: GKIFQDFSKG TRLLELNILL NQTVMIRRLK QHLLTQLPPK RRQIVTILLK KSDIALAMAI VSEAKKQKDG AIAEVTEKSH EPDQNARGSN EAGHVNAENS
0501: DGPNSDKENQ LCGKLSYQQL GIAKLSAFRE WLSLHPLLSG LDYTPEEIDG DRSSTKMVVF AHHHKVLDGI QEFICDKGIG FVRIDGTTLP RDRQLAVQSF
0601: QFSSEVKIAI IGVEAGGVGL DFSAAQNVVF LELPKTPSLL LQAEDRAHRR GQTSAVNVYI FCAKDTMDES NWQNLNKKLH RISSTTDGKY DGKTEIEIGG
0701: ASIFKPAEES SEREVLEGQP SESNTVVADK IVESCDDPGT ETDVSNTIDL KDDMTSQLEI LEVCPFVENG SGSGMRSSGT ISLTMLAQEN QENHKPKNLI
0801: ADDGLVKEVD SSSIFPLIDS LRFEVSQNTG RIHLYSCIPG KDPRPRPHFQ NFRPEEIEAS NPSQGTTKEK NPESITDDPV HVLAILEFMK EWKSLRPIEK
0901: RKLLGKPLQL PLSLELSYLS ESTSHNSEGL LRGGSKRRNT PFSEISIPLP ENAVWIKVNL RSGHQRKEKE YTQAWSMSNE PLCKLCQKPC AGYNAKEPEY
1001: LEDLFCELAC YEDYRTRTSS RYIRQIEHGI CTNCKLDCHQ LVKRLRPLPL EKRRTYINKA APELFARKNL LETLVNDPTE GNAWHADHII PVYQGGGECR
1101: LENMRTLCVA CHADVTAAQC AERKLIRSKA RKQLKNTLNE LRNNPKQKDL SADENTKETD SATNEEEDEL MIEVPGSAYS IDQKINHDAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)