AT5G07760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : formin homology 2 domain-containing protein / FH2 domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
formin homology 2 domain-containing protein / FH2 domain-containing protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 protein (TAIR:AT5G07650.1); Has 48311 Blast hits to 23266 proteins in 1185 species: Archae - 68; Bacteria - 7011; Metazoa - 18492; Fungi - 4245; Plants - 10792; Viruses - 1661; Other Eukaryotes - 6042 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2468239..2473657 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95547.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.51 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 853 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPVEISGAD AVVSPPMRGR VPLPPPPPPP PPPMRRRAPL PPPPPPPMRR RAPLPPPPPP AMRRRVLPRP PPPPPPLPMF DAEVLCCCYP PTRVRREAPL 101: PPPPLIFVGA PPPTCALKGI VCCFPCPSKK KSSLKRFNWV KITRALPGSL WDELQIQQVC HGDIEDEQIL CAIELDVSEI ETFFSLGAAK PEKDPLIDLR 201: RATDTELTLM LLNIRLPADM MAAIMAMDES VLDDDEIRGL INLFPTKENM ELLMSYTGGK WTLEKWEQYF QELRKVLRVE SKLRVFYFKI QFSTKITQFK 301: KRLNVVNSAC EEVCSSQKLK EIMKKITCLG NTSNQGTGRG VTVGFNLDSL CVKSMHNFCK VLASEASDLL DVHKDLQSLE SASKKQLKSL AEEMQDIIRD 401: LEKLNQELTA AETDGPDSQV FRNTLKDFIS IAETEVKTVL SLYSVVGKNA VALVNYFGED PKWCPFEQVT ATLLHFIRLF EKAHEENVKK ADLEKKKAAN 501: ETEMKHVVHN SWLNNLNIRA STLIDQRRAF NTMIMLQKVE MPLPDMMAAV LGMDESVLDV DQIENLIRFC PTKEEMKLLK NYTGDKATLG KCEQYFLELM 601: KVPGVESKLR VFSFKIHFGT QIKELNKGLN TVNSACEEIR TSQKLKEIMK IILCLGNILN QGTARGSAVG FKLDSLLNLS EKCSANTNMT LMHYLCKVLA 701: SKASDLLDFH KDLENLESAS KIHLKSLAEE MVAITKGLQK LNQELTASES DGPISEVFRK LLKDFISVAE TQVATVSSLY SSVGGNTDAL VHYFGEDPND 801: YPFEQAAHQE NVKQAELEKK KAAKEAEMEK TKKRVSLTNK KASGVGEEES CLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)