AT5G07590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 672 Blast hits to 646 proteins in 166 species: Archae - 0; Bacteria - 97; Metazoa - 271; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2401712..2403731 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51855.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.59 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFTEAYKQT GPCCFSPNSR YVAVANDYRL VIRDTFSFQV VQLFSCLDKI SYIEWALDSE YILCGLYKKP MIQAWSLTQP EWTCKIDEGP AGISYARWSP 101: DSRHILTTSE FQLRLTVWSL LNTACVHVQW PKHGSKGVSF NQDGKFAAIC TRRDCKDYVN LLSCQSWEIM GSFAVDTLDL ADLEWSPDDS SIVVWDSPLE 201: YKVLIYSPDG RCLFKYQAYE CGLGVKTVSW SPCGQFLAIG SYDQMLRVLN HLTWKTFAEF LHLSTVRAPC SAAIFKEIDE PLQLDMSELS LDENFMPSNY 301: DASEGYISVR YEVMELPVAF PFQKPPADKP NPKQGVGLLA WSKDSQYICT RNDSMPTALW IWDMRLLEVA AILVQKEPIR AAVWDPTCTR LLLCTGSSHL 401: YMWTPSGAFC VCNPLPGFSI SDLKWNIDGS CLLLKDKDAF CCATVPSLPE SSDYSSDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)