suba logo
AT5G07440.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23444301 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21296373 (2011): mitochondrion
  • PMID:19688752 (2009): mitochondrion
  • PMID:18998720 (2009): extracellular region
  • PMID:18385124 (2008): mitochondrion
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:17137349 (2006): mitochondrion
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14671022 (2004): mitochondrion
  • PMID:11743115 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamate dehydrogenase 2
Curator
Summary (TAIR10)
Encodes the beta-subunit of the glutamate dehydrogenase. The enzyme is almost exclusively found in the mitochondria of stem and leaf companion cells.
Computational
Description (TAIR10)
glutamate dehydrogenase 2 (GDH2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glutamate/phenylalanine/leucine/valine dehydrogenase (InterPro:IPR006095), Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (InterPro:IPR006096), Glutamate dehydrogenase (InterPro:IPR014362), NAD(P)-binding domain (InterPro:IPR016040), Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain (InterPro:IPR006097); BEST Arabidopsis thaliana protein match is: glutamate dehydrogenase 1 (TAIR:AT5G18170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G07440-MONOMERBioCyc:ARA:GQT-326-MONOMERBioCyc:ARA:GQT-327-MONOMERBioCyc:MetaCyc:AT5G07440-MONOMEREC:1.4.1.3eggNOG:COG0334eggNOG:KOG2250
EMBL:AL163912EMBL:CP002688EMBL:U56635EnsemblPlants:AT5G07440EnsemblPlants:AT5G07440.1EnsemblPlants:AT5G07440.2entrez:830635
ExpressionAtlas:Q38946Gene3D:3.40.50.720GeneID:830635Genevisible:Q38946GO:GO:0004352GO:GO:0004353GO:GO:0005507
GO:GO:0005524GO:GO:0005739GO:GO:0005774GO:GO:0006520GO:GO:0008270GO:GO:0009651GO:GO:0046686
GO:GO:0050897hmmpanther:PTHR11606hmmpanther:PTHR11606:SF12HOGENOM:HOG000243801InParanoid:Q38946InterPro:IPR006095InterPro:IPR006096
InterPro:IPR006097InterPro:IPR014362InterPro:IPR016040KEGG:ath:AT5G07440KO:K00261OMA:GAEVMDSPaxDb:Q38946
Pfam:PF00208Pfam:PF02812Pfam:Q38946PhylomeDB:Q38946PIR:T49883PIRSF:PIRSF000185PRIDE:Q38946
PRINTS:PR00082PRO:PR:Q38946PROSITE:PS00074ProteinModelPortal:Q38946Proteomes:UP000006548Reactome:R-ATH-70614RefSeq:NP_001119183.1
RefSeq:NP_196361.1scanprosite:PS00074SMART:SM00839SMR:Q38946STRING:3702.AT5G07440.1SUPFAM:SSF51735SUPFAM:SSF53223
SwissPalm:Q38946TAIR:AT5G07440tair10-symbols:GDH2UniGene:At.21712UniProt:Q38946
Coordinates (TAIR10) chr5:+:2356153..2358012
Molecular Weight (calculated) 44701.60 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.15
Length 411 amino acids
Sequence (TAIR10)
(BLAST)
001: MNALAATNRN FRHASRILGL DSKIERSLMI PFREIKVECT IPKDDGTLVS YIGFRVQHDN ARGPMKGGIR YHPEVDPDEV NALAQLMTWK TAVADIPYGG
101: AKGGIGCSPR DLSLSELERL TRVFTQKIHD LIGIHTDVPA PDMGTNAQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG REAATGRGVV FATEALLAEY
201: GKSIQGLTFV IQGFGNVGTW AAKLIHEKGG KVVAVSDITG AIRNPEGIDI NALIKHKDAT GSLNDFNGGD AMNSDELLIH ECDVLIPCAL GGVLNKENAG
301: DVKAKFIVEA ANHPTDPDAD EILSKKGVII LPDIYANAGG VTVSYFEWVQ NIQGFMWEEE KVNLELQKYM TRAFHNIKTM CHTHSCNLRM GAFTLGVNRV
401: ARATQLRGWE A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)