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AT5G07240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28115582 (2017): nucleus nuclear matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : IQ-domain 24
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 24 (IQD24); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 23 (TAIR:AT5G62070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNPHeggNOG:ENOG4111C7UEMBL:AL163652EMBL:BT006056EMBL:CP002688EnsemblPlants:AT5G07240EnsemblPlants:AT5G07240.1
entrez:830615GeneID:830615Gramene:AT5G07240.1hmmpanther:PTHR32295hmmpanther:PTHR32295:SF11InterPro:IPR000048InterPro:IPR025064
InterPro:IPR027417KEGG:ath:AT5G07240OMA:RTEESLWPfam:PF00612Pfam:PF13178Pfscan:PS50096PhylomeDB:Q9LYP2
PIR:T48495PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_196341.1SMART:SM00015SMR:Q9LYP2STRING:3702.AT5G07240.1
SUPFAM:SSF52540TAIR:AT5G07240tair10-symbols:IQD24UniGene:At.48993UniGene:At.71052UniProt:Q9LYP2
Coordinates (TAIR10) chr5:+:2272028..2274051
Molecular Weight (calculated) 45265.90 Da
IEP (calculated) 10.87
GRAVY (calculated) -0.89
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFFGRLFGS KKQEKATPNR RRWSFATRSS HPENDSSSHS SKRRGDEDVL NGDKHAIAVA AATAAVAEAA LAAARAAAEV VRLTNGGRNS SVKQISRSNR
101: RWSQEYKAAM KIQSAFRGYL ARRALRALKA LVKLQALVKG HIVRKQTADM LRRMQTLVRL QARARASRSS HVSDSSHPPT LMIPSSPQSF HARCVSEAEY
201: SKVIAMDHHH NNHRSPMGSS RLLDQWRTEE SLWSAPKYNE DDDKILEVDT WKPHFRESPR KRGSLVVPTS VENSPQLRSR TGSSSGGSRR KTPFTPARSE
301: YEYYSGYHPN YMANTESYKA KVRSQSAPRQ RLQDLPSESG YKRSIQGQYY YYTPAAERSF DQRSDNGIAG YRGVSDGLDR NQSDKSKMYT SFFSSNPLFF
401: Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)