suba logo
AT5G07100.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 26
Curator
Summary (TAIR10)
Encodes WRKY DNA-binding protein 26 (WRKY26).
Computational
Description (TAIR10)
WRKY DNA-binding protein 26 (WRKY26); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 3 (TAIR:AT2G03340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15880eggNOG:ENOG410J384eggNOG:ENOG4112BTFEMBL:AB010697EMBL:AF224699EMBL:AK117545EMBL:AL163652
EMBL:AY084692EMBL:CP002688EnsemblPlants:AT5G07100EnsemblPlants:AT5G07100.1entrez:830601ExpressionAtlas:Q9C5T3Gene3D:2.20.25.80
GeneID:830601Genevisible:Q9C5T3GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0034605GO:GO:0043565
GO:GO:0070370hmmpanther:PTHR31221hmmpanther:PTHR31221:SF1HOGENOM:HOG000242409InParanoid:Q9C5T3InterPro:IPR003657KEGG:ath:AT5G07100
OMA:FKSEIMSPaxDb:Q9C5T3Pfam:PF03106Pfam:Q9C5T3Pfscan:PS50811PhylomeDB:Q9C5T3PIR:T48481
PRIDE:Q9C5T3PRO:PR:Q9C5T3PROSITE:PS50811ProteinModelPortal:Q9C5T3Proteomes:UP000006548RefSeq:NP_196327.1SMART:SM00774
SMR:Q9C5T3STRING:3702.AT5G07100.1SUPFAM:0050605SUPFAM:SSF118290TAIR:AT5G07100tair10-symbols:WRKY26UniGene:At.5041
UniProt:Q9C5T3
Coordinates (TAIR10) chr5:+:2204313..2205647
Molecular Weight (calculated) 34912.40 Da
IEP (calculated) 10.02
GRAVY (calculated) -0.85
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSFDRQRAV PKFKTATPSP LPLSPSPYFT MPPGLTPADF LDSPLLFTSS NILPSPTTGT FPAQSLNYNN NGLLIDKNEI KYEDTTPPLF LPSMVTQPLP
101: QLDLFKSEIM SSNKTSDDGY NWRKYGQKQV KGSENPRSYF KCTYPNCLTK KKVETSLVKG QMIEIVYKGS HNHPKPQSTK RSSSTAIAAH QNSSNGDGKD
201: IGEDETEAKR WKREENVKEP RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT FTGCFVRKHV ERAFQDPKSV ITTYEGKHKH QIPTPRRGPV
301: LRLLGKTET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)