suba logo
AT5G07060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : CCCH-type zinc fingerfamily protein with RNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: CCCH-type zinc fingerfamily protein with RNA-binding domain (TAIR:AT1G07360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSFKeggNOG:KOG0153EMBL:AB010697EMBL:CP002688
EMBL:DQ446923EMBL:DQ653266EnsemblPlants:AT5G07060EnsemblPlants:AT5G07060.1
entrez:830597ExpressionAtlas:Q9FL40Gene3D:3.30.70.330Gene3D:4.10.1000.10
GeneID:830597Genevisible:Q9FL40GO:GO:0000166GO:GO:0000387
GO:GO:0000974GO:GO:0003677GO:GO:0017070GO:GO:0036002
GO:GO:0046872GO:GO:0071006GO:GO:0071007hmmpanther:PTHR14089
hmmpanther:PTHR14089:SF6HOGENOM:HOG000171086InParanoid:Q9FL40InterPro:IPR000504
InterPro:IPR000571InterPro:IPR012677OMA:PITCESCPaxDb:Q9FL40
Pfam:PF00076Pfam:Q9FL40Pfscan:PS50103PhylomeDB:Q9FL40
PRIDE:Q9FL40PRO:PR:Q9FL40PROSITE:PS50103ProteinModelPortal:Q9FL40
Proteomes:UP000006548RefSeq:NP_196323.1SMART:SM00356SMR:Q9FL40
STRING:3702.AT5G07060.1SUPFAM:SSF54928SUPFAM:SSF90229TAIR:AT5G07060
UniGene:At.54760UniProt:Q9FL40
Coordinates (TAIR10) chr5:-:2194394..2195872
Molecular Weight (calculated) 41756.80 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.89
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHRDHGADG WESADFPITC ESCFGDNPYM RMTRADYDKE CKICSRPFTA FRWRPGRNAR FKKTEICQTC SKLKNVCQVC LLDLGFGLPV QVRDSALNIN
101: SHYSVPMSHV NREYFADEHD PKTRAGLDYE SSFGKMQPND TILKLQRRTP SYEKNRPKIC SFYTIGQCKR GAECSFRHEM PETGELSHQN IRDRYYSVND
201: PVAMKLLRKA GEMGTLEPPE DESIKTLYVG GLNSRIFEQD IHDHFYAYGE MESIRVMAED GKYDQSGSNQ QQQGSIAHTG LISQQQNQHS QMQQYYMQPP
301: PPNEYSHYPS MDTQRMGAAF STQESDGSST SENNRAYSSY SYPMPPHQPY PTPPPYIDIY IYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)