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AT5G06960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : OCS-element binding factor 5
Curator
Summary (TAIR10)
Encodes a basic leucine zipper (B-ZIP) containing protein that interacts with NPR1 to promote expression of salicylic acid induced genes. Binds the ocs-element.
Computational
Description (TAIR10)
OCS-element binding factor 5 (OBF5); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: TGACG motif-binding factor 6 (TAIR:AT3G12250.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15866eggNOG:ENOG410JWIKeggNOG:ENOG41104W8EMBL:AB010697EMBL:AY058830EMBL:AY143864EMBL:CP002688
EMBL:X69900EnsemblPlants:AT5G06960EnsemblPlants:AT5G06960.1EnsemblPlants:AT5G06960.2entrez:830587GeneID:830587Genevisible:Q39163
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009814GO:GO:0009863GO:GO:0042802
GO:GO:0043565Gramene:AT5G06960.1Gramene:AT5G06960.2hmmpanther:PTHR22952hmmpanther:PTHR22952:SF183HOGENOM:HOG000116597InParanoid:Q39163
IntAct:Q39163InterPro:IPR004827InterPro:IPR025422KEGG:ath:AT5G06960KO:K14431ncoils:CoilOMA:AIDSHAT
PaxDb:Q39163Pfam:PF00170Pfam:PF14144Pfam:Q39163Pfscan:PS50217PhylomeDB:Q39163PIR:S48122
PRIDE:Q39163PRO:PR:Q39163PROSITE:PS00036PROSITE:PS50217ProteinModelPortal:Q39163Proteomes:UP000006548RefSeq:NP_196313.1
RefSeq:NP_974745.1scanprosite:PS00036SMART:SM00338SMR:Q39163STRING:3702.AT5G06960.1SUPFAM:SSF57959TAIR:AT5G06960
tair10-symbols:OBF5tair10-symbols:TGA5UniGene:At.5408UniProt:Q39163
Coordinates (TAIR10) chr5:+:2155742..2157400
Molecular Weight (calculated) 36892.60 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.61
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDTSPRTSV STDGDTDHNN LMFDEGHLGI GASDSSDRSK SKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTAGDG AMAFDVEYRR WQEDKNRQMK ELSSAIDSHA TDSELRIIVD GVIAHYEELY RIKGNAAKSD VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LIASQLEPLT EQQSLDINNL QQSSQQAEDA LSQGMDNLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRLLTT
301: RQSARALLAV HNYTLRLRAL SSLWLARPRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)