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AT5G06910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : J-domain protein 6
Curator
Summary (TAIR10)
DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.
Computational
Description (TAIR10)
J-domain protein 6 (ATJ6); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G12170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:KOG0719EMBL:AK228246EnsemblPlants:AT5G06910EnsemblPlants:AT5G06910.1entrez:830582ExpressionAtlas:Q0WRQ5
Gene3D:1.10.287.110GeneID:830582Gramene:AT5G06910.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF276InterPro:IPR001623iPTMnet:Q0WRQ5
KEGG:ath:AT5G06910KO:K09529ncoils:CoilOMA:NRMESLMPaxDb:Q0WRQ5Pfam:PF00226Pfam:Q9FL54
Pfscan:PS50076PhylomeDB:Q0WRQ5PRIDE:Q0WRQ5PRINTS:PR00625PROSITE:PS50076ProteinModelPortal:Q0WRQ5RefSeq:NP_196308.1
SMART:SM00271SMR:Q0WRQ5STRING:3702.AT5G06910.1SUPFAM:SSF46565TAIR:AT5G06910tair10-symbols:ATJ6UniGene:At.24700
UniGene:At.69266UniProt:Q0WRQ5UniProt:Q9FL54
Coordinates (TAIR10) chr5:+:2140598..2142525
Molecular Weight (calculated) 32575.40 Da
IEP (calculated) 8.71
GRAVY (calculated) -1.12
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKKKSRAS TTEEDEIEMD NAGPSSETSL YEVLGVERRA TSQEIRKAYH KLALKLHPDK NQDDKEAKDK FQQLQKVISI LGDEEKRAVY DQTGSIDDAD
101: IPGDAFENLR DFFRDMYKKV NEADIEEFEA NYRGSESEKK DLLELFNKFK GKMNRLFCSM LCSDPKLDSH RFKDMLDEAI AAGEVKSSKA YEKWANKISE
201: TKPPTSPLRK RKKKKSAAKD SETDLCLMIA KRQEERKGKV DSMFSSLISR YGGDAEAEPT EEEFEAAQRR IESKRKPSKK SRGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)