AT5G06900.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.937 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cytochrome P450, family 93, subfamily D, polypeptide 1 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
member of CYP93D | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cytochrome P450, family 93, subfamily D, polypeptide 1 (CYP93D1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 712, subfamily A, polypeptide 1 (TAIR:AT2G42250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:2136160..2137925 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 57483.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 507 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVDLQYFSVI ILVCLGITVL IQAITNRLRD RLPLPPSPTA LPIIGHIHLL GPIAHQALHK LSIRYGPLMY LFIGSIPNLI VSSAEMANEI LKSNELNFLN 101: RPTMQNVDYL TYGSADFFSA PYGLHWKFMK RICMVELFSS RALDSFVSVR SEELKKLLIR VLKKAEAEES VNLGEQLKEL TSNIITRMMF RKMQSDSDGG 201: EKSEEVIKMV VELNELAGFF NVSETFWFLK RLDLQGLKKR LKNARDKYDV IIERIMEEHE SSKKNATGER NMLDVLLDIY EDKNAEMKLT RENIKAFIMN 301: IYGGGTDTSA ITVEWALAEL INHPEIMKKA QQEIEQVVGN KRVVEESDLC NLSYTQAVVK ETMRLHPGGP IFVRESDEEC AVAGFRIPAK TRVIVNVWAI 401: GRDSNQWEDP LEFRPERFEG SEWKVMSEKM MSFGAGRRSC PGEKMVFRFV PIILAAIIQC FELKVKGSVD MDEGTGSSLP RATPLVCVPV AKEATQSFSL 501: LEPNVNF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)