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AT5G06860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
  • PMID:21109274 (2011): extracellular region
  • PMID:18998720 (2009): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polygalacturonase inhibiting protein 1
Curator
Summary (TAIR10)
Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.
Computational
Description (TAIR10)
polygalacturonase inhibiting protein 1 (PGIP1); FUNCTIONS IN: polygalacturonase inhibitor activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 2 (TAIR:AT5G06870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG3DeggNOG:ENOG410YB0YEMBL:AB010697EMBL:AF229249EMBL:AY048295EMBL:AY133567EMBL:CP002688
EnsemblPlants:AT5G06860EnsemblPlants:AT5G06860.1entrez:830577Gene3D:3.80.10.10GeneID:830577Genevisible:Q9M5J9GO:GO:0005576
GO:GO:0005618GO:GO:0005794GO:GO:0009505GO:GO:0009506GO:GO:0016020GO:GO:0043086GO:GO:0090353
Gramene:AT5G06860.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF136InParanoid:Q9M5J9InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675
iPTMnet:Q9M5J9KEGG:ath:AT5G06860OMA:GHIPTGGPaxDb:Q9M5J9Pfam:PF00560Pfam:PF08263Pfam:Q9M5J9
PhylomeDB:Q9M5J9PRIDE:Q9M5J9PRO:PR:Q9M5J9ProteinModelPortal:Q9M5J9Proteomes:UP000006548RefSeq:NP_196304.1SMR:Q9M5J9
STRING:3702.AT5G06860.1SUPFAM:SSF52058TAIR:AT5G06860tair10-symbols:ATPGIP1tair10-symbols:PGIP1UniGene:At.75235UniGene:At.8519
UniProt:Q9M5J9
Coordinates (TAIR10) chr5:+:2132373..2133434
Molecular Weight (calculated) 36691.30 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.09
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)