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AT5G06860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:18998720 (2009): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polygalacturonase inhibiting protein 1
Curator
Summary (TAIR10)
Encodes a polygalacturonase inhibiting protein involved in defense response. PGIPs inhibit the function of cell wall pectin degrading enzymes such as those produced by fungal pathogens. PGIP1 is induced by fungal infection.
Computational
Description (TAIR10)
polygalacturonase inhibiting protein 1 (PGIP1); FUNCTIONS IN: polygalacturonase inhibitor activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: polygalacturonase inhibiting protein 2 (TAIR:AT5G06870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG3DeggNOG:ENOG410YB0YEMBL:AB010697EMBL:AF229249
EMBL:AY048295EMBL:AY133567EMBL:CP002688EnsemblPlants:AT5G06860
EnsemblPlants:AT5G06860.1entrez:830577Gene3D:3.80.10.10GeneID:830577
Genevisible:Q9M5J9GO:GO:0005576GO:GO:0005618GO:GO:0005794
GO:GO:0009505GO:GO:0009506GO:GO:0016020GO:GO:0043086
GO:GO:0090353Gramene:AT5G06860.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF136
InParanoid:Q9M5J9InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675
iPTMnet:Q9M5J9KEGG:ath:AT5G06860OMA:GHIPTGGPaxDb:Q9M5J9
Pfam:PF00560Pfam:PF08263Pfam:Q9M5J9PhylomeDB:Q9M5J9
PRIDE:Q9M5J9PRO:PR:Q9M5J9ProteinModelPortal:Q9M5J9Proteomes:UP000006548
RefSeq:NP_196304.1SMR:Q9M5J9STRING:3702.AT5G06860.1SUPFAM:SSF52058
TAIR:AT5G06860tair10-symbols:ATPGIP1tair10-symbols:PGIP1UniGene:At.75235
UniGene:At.8519UniProt:Q9M5J9
Coordinates (TAIR10) chr5:+:2132373..2133434
Molecular Weight (calculated) 36691.30 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.09
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)