AT5G06850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT5G48060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2127200..2129584 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91008.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.42 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||
| Length | 794 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAKDGAKSQ EDYKLKDMKP ELGERWPHGG QRGGTGWIGS ERAASTYDLV EQMFYLYVRV VKAKDLPPNP VTSNCDPYVE VKIGNYKGKT KHFEKRTNPE 101: WNQVFAFSKD KVQSSTVEVF VRDKEMVTRD EYIGKVVFDM REVPTRVPPD SPLAPQWYRL EDRRGESKKR GEVMVAVWLG TQADEAFPDA WHSDASSVQG 201: EGVQSVRSKV YVSPKLWYLR VNVIEAQDVE PSDRSQPPQA FVKVQVGNQI LKTKLCPNKT TNPMWNEDLV FVAAEPFEEQ FFLTVENKVT PAKDEVMGRL 301: ISPLSVFEKR LDHRAVHSKW YNLEKFGFGA LEGDKRHELK FSSRIHLRVC LEGGYHVMDE STLYISDVKP TARQLWKSPI GILEVGILSA QGLSPMKTKD 401: GKATTDPYCV AKYGQKWVRT RTIIDSSSPK WNEQYTWEVY DPCTVITLGV FDNCHLGGSE KSNSGAKVDS RIGKVRIRLS TLEADRIYTH SYPLLVLQTK 501: GLKKMGEVQL AVRFTCLSLA HMIYLYGHPL LPKMHYLHPF TVNQLDSLRY QAMSIVAARL SRAEPPLRKE NVEYMLDVDS HMWSMRRSKA NFFRIVSVFA 601: GLIAMSKWLG DVCYWKNPLT TILFHVLFFI LICYPELILP TTFLYMFLIG LWNFRFRPRH PAHMDTKVSW AEAASPDELD EEFDTFPTSK GQDVVKMRYD 701: RLRSVAGRIQ MVVGDIATQG ERFQALLSWR DPRATCLFVI FCLVAAMILY VTPFKIIALA GGMFWMRHPK FRSKMPSAPS NFFRKLPSKA DCML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)