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AT5G06790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYPWeggNOG:ENOG410YTD2EMBL:AK221527EMBL:AP002032
EMBL:BT012178EMBL:CP002688EnsemblPlants:AT5G06790EnsemblPlants:AT5G06790.1
entrez:830569GeneID:830569Gramene:AT5G06790.1hmmpanther:PTHR33450
hmmpanther:PTHR33450:SF4HOGENOM:HOG000083908InterPro:IPR008480KEGG:ath:AT5G06790
ncoils:CoilOMA:HEKFMLEPfam:PF05553PhylomeDB:Q9FG28
Proteomes:UP000006548RefSeq:NP_196297.1TAIR:AT5G06790UniGene:At.49735
UniGene:At.74147UniProt:Q9FG28
Coordinates (TAIR10) chr5:-:2098088..2098717
Molecular Weight (calculated) 23893.50 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.52
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMPLKSTSS SMSSSQCSSS SSPTSSSMKL KSLIQTLIIS QVCRLLREIS RVSSILVRVL RKKQYNFLSV SSLLYPKRVS KKQKNNILFG SFRLHYNFCS
101: SHVVPVSAPV RLPEELYLAH LVHESTWESM YSTESMDGRD DDDQEPSQLS SYLRQLEDKV KDGQEEETET MMNEIDKLAD RFIANCHEKF MLEKVDSYRR
201: SQGTLNRSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)