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AT5G06780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.728
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT3G12140.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YF3TeggNOG:KOG4675EMBL:AF428436EMBL:AP002032EMBL:AY085555EMBL:AY125551EMBL:CP002688
EnsemblPlants:AT5G06780EnsemblPlants:AT5G06780.1EnsemblPlants:AT5G06780.2entrez:830567ExpressionAtlas:Q9FG29GeneID:830567Genevisible:Q9FG29
GO:GO:0005634GO:GO:0009408GO:GO:0010228GO:GO:0050832hmmpanther:PTHR33432hmmpanther:PTHR33432:SF6HOGENOM:HOG000241095
IntAct:Q9FG29InterPro:IPR005491InterPro:IPR014002KEGG:ath:AT5G06780ncoils:CoilOMA:ILEQEAYPaxDb:Q9FG29
Pfam:PF03735Pfscan:PS51138PRIDE:Q9FG29PRO:PR:Q9FG29PROSITE:PS51138ProteinModelPortal:Q9FG29Proteomes:UP000006548
RefSeq:NP_001190242.1RefSeq:NP_196296.1SMART:SM00743SMART:SM01191SMR:Q9FG29STRING:3702.AT5G06780.1SUPFAM:0053920
SUPFAM:SSF158639SUPFAM:SSF63748TAIR:AT5G06780UniGene:At.8004UniProt:Q8LE93UniProt:Q9FG29
Coordinates (TAIR10) chr5:-:2094147..2096377
Molecular Weight (calculated) 36353.30 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.82
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGLHINMEA QIHILEQEAY SAVLRAFQAQ ADEFSWDKAT VMTNLRKELR ISDDENRQLL NNVHNDDLIK RIRDSRPRGG NQVVRHQSLD VHPSPTFSAS
101: RKKQKTFQSY PSIGSTRSKS FNNRVVSANE PAEALIGRKV WTKWPEDNSF YEAVVTQYNA NEGRHALVYD INTVNETWEW VDLNEIPTKD IRWDGEEDGV
201: TLNVGHGGGT TRGNRRTLSH GGRGRGPRTQ PRREHLATEN GGGRKFFGEI ELFNTDSLVK EVERVFDSNL PDPHELDKAK KLLKEHEQAL IAAIARLTDA
301: SDYESDGEEP YSHELPMLLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)