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AT5G06710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homeobox from Arabidopsis thaliana
Curator
Summary (TAIR10)
Homeobox-leucine zipper protein.
Computational
Description (TAIR10)
homeobox from Arabidopsis thaliana (HAT14); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT4G37790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15839eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AJ431182
EMBL:AK227423EMBL:AP002032EMBL:BT005879EMBL:CP002688
EMBL:U09334EnsemblPlants:AT5G06710EnsemblPlants:AT5G06710.1entrez:830560
Gene3D:1.10.10.60GeneID:830560Genevisible:P46665GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0043565hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF243HOGENOM:HOG000241612InParanoid:P46665IntAct:P46665
InterPro:IPR001356InterPro:IPR003106InterPro:IPR009057InterPro:IPR017970
KEGG:ath:AT5G06710KO:K09338ncoils:CoilOMA:CERDRDN
PaxDb:P46665Pfam:P46665Pfam:PF00046Pfam:PF02183
Pfscan:PS50071PhylomeDB:P46665PIR:T52367PRIDE:P46665
PRO:PR:P46665PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:P46665
Proteomes:UP000006548RefSeq:NP_196289.2RefSeq:NP_974743.1scanprosite:PS00027
SMART:SM00340SMART:SM00389SMR:P46665STRING:3702.AT5G06710.1
SUPFAM:SSF46689TAIR:AT5G06710tair10-symbols:HAT14UniGene:At.357
UniProt:P46665
Coordinates (TAIR10) chr5:-:2068305..2070284
Molecular Weight (calculated) 37605.10 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.83
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MELALSLGDN TKKQFSFMEK NSKINNPSVS STSTSEKDLG FCMALDVAFG GHRSLSSSSS PSVEDEKKKP APRAKKSDEF RVSSSVDPPL QLQLHFPNWL
101: PENSKGRQGG RMPLGAATVV EEEEEEEEAV PSMSVSPPDS VTSSFQLDFG IKSYGYERRS NKRDIDDEVE RSASRASNED NDDENGSTRK KLRLSKDQSA
201: FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRTLKT STPFYMQLPA TTLTMCPSCE
301: RVATSAAQPS TSAAHNLCLS TSSLIPVKPR PAKQVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)