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AT5G06700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.552
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828)
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes.
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 18773 Blast hits to 6666 proteins in 584 species: Archae - 22; Bacteria - 3086; Metazoa - 4181; Fungi - 2776; Plants - 1414; Viruses - 506; Other Eukaryotes - 6788 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKE3eggNOG:ENOG410YC5GEMBL:AK229444EMBL:AP002032EMBL:AY085444EMBL:CP002688EMBL:HM120873
EnsemblPlants:AT5G06700EnsemblPlants:AT5G06700.1entrez:830559GeneID:830559Genevisible:Q9FG35GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0009827GO:GO:0016021GO:GO:0016413GO:GO:0030244GO:GO:0045489Gramene:AT5G06700.1
hmmpanther:PTHR32285hmmpanther:PTHR32285:SF22HOGENOM:HOG000238066InParanoid:Q9FG35InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962
InterPro:IPR029989KEGG:ath:AT5G06700OMA:QEWEIVDPANTHER:PTHR32285PANTHER:PTHR32285:SF22PaxDb:Q9FG35Pfam:PF13839
Pfam:PF14416Pfam:Q9FG35PhylomeDB:Q9FG35PRIDE:Q9FG35PRO:PR:Q9FG35ProMEX:Q9FG35ProteinModelPortal:Q9FG35
Proteomes:UP000006548RefSeq:NP_568173.2STRING:3702.AT5G06700.1TAIR:AT5G06700tair10-symbols:TBRTMHMM:TMhelixUniGene:At.32824
UniProt:Q9FG35
Coordinates (TAIR10) chr5:+:2063638..2065810
Molecular Weight (calculated) 67928.40 Da
IEP (calculated) 9.12
GRAVY (calculated) -0.61
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MASDAVKYMP IHGGGTTATT AADIKSFFSA LKPKKTSTFA YAFVITFVSF TLFFAFSPSP NSSSPWFSNI FTSSSTTTTS DNTSGSQFSS IFSYILPNVT
101: STKPTNRSSD ATDSLSVNAT SPPLNSNSKN GTLQTPAPET HTPVAKNTTF ESPIVNGTNP DAKNNTSSHP LLSDKSSTTG SNNQSRTTAD TETVNRNQTT
201: SPAPSKAPVS VDLKTNSSSN SSTASSTPKK QTKTVDLVSS VKQEIEKWSE SLKNCEFFDG EWIKDDSYPL YKPGSCNLID EQFNCITNGR PDKDFQKLKW
301: KPKKCSLPRL NGAILLEMLR GRRLVFVGDS LNRNMWESLV CILKGSVKDE TKVYEARGRH HFRGEAEYSF VFQDYNCTVE FFVSPFLVQE WEIVDKKGTK
401: KETLRLDLVG KSSEQYKGAD VIVFNTGHWW THEKTSKGED YYQEGSNVYH ELAVLEAFRK ALTTWGRWVE KNVNPAKSLV FFRGYSASHF SGGQWNSGGA
501: CDSETEPIKN DTYLTPYPSK MKVLEKVLRG MKTPVTYLNI TRLTDYRKDG HPSVYRKQSL SEKEKKSPLL YQDCSHWCLP GVPDSWNEIL YAELIVKLNQ
601: LSQTQRKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)