suba logo
AT5G06690.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WCRKC thioredoxin 1
Curator
Summary (TAIR10)
Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.
Computational
Description (TAIR10)
WCRKC thioredoxin 1 (WCRKC1); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: WCRKC thioredoxin 2 (TAIR:AT5G04260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15837eggNOG:COG0526eggNOG:KOG0907EMBL:AF144391EMBL:AF144393EMBL:AK317080EMBL:AP002032
EMBL:BT029447EMBL:CP002688EnsemblPlants:AT5G06690EnsemblPlants:AT5G06690.1entrez:830558ExpressionAtlas:Q9FG36Gene3D:3.40.30.10
GeneID:830558Genevisible:Q9FG36GO:GO:0006662GO:GO:0009570GO:GO:0015035GO:GO:0045454hmmpanther:PTHR10438
hmmpanther:PTHR10438:SF283HOGENOM:HOG000235057InParanoid:Q9FG36InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766PANTHER:PTHR10438
PaxDb:Q9FG36Pfam:PF00085Pfam:Q9FG36Pfscan:PS51352PhylomeDB:Q9FG36PRIDE:Q9FG36PRO:PR:Q9FG36
PROSITE:PS51352ProteinModelPortal:Q9FG36Proteomes:UP000006548RefSeq:NP_568172.1SMR:Q9FG36STRING:3702.AT5G06690.2SUPFAM:SSF52833
TAIR:AT5G06690tair10-symbols:WCRKC1UniGene:At.24443UniProt:Q9FG36
Coordinates (TAIR10) chr5:-:2060651..2061956
Molecular Weight (calculated) 24518.00 Da
IEP (calculated) 10.05
GRAVY (calculated) -0.50
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFENLKISR HISSSTKNLL KAKKIMAALA SNPQMLTRQA HGNKKEQLWR KESLNLEKKC GFCVSVYSNE KLGRSHMEKE WRLKAFWSNI AQPTTLEMEP
101: INNVEELDAV LSHARQLSQP IIIEWMASWC RKCIYLKPKL EKLAAEYNNR AKFYYVDVNK VPQTLVKRGN ISKMPTIQLW KEDEMKEEVI GGHKGWLVIE
201: EVRELINKFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)