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AT5G06680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : spindle pole body component 98
Curator
Summary (TAIR10)
Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.
Computational
Description (TAIR10)
spindle pole body component 98 (SPC98); CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259), Gamma tubulin complex protein 3 (InterPro:IPR015697); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT5G17410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15836eggNOG:ENOG410XQ5BeggNOG:KOG2000EMBL:AP002032EMBL:AY099727EMBL:BT010545EMBL:CP002688
EnsemblPlants:AT5G06680EnsemblPlants:AT5G06680.1entrez:830557GeneID:830557Genevisible:Q9FG37GO:GO:0000922GO:GO:0000923
GO:GO:0000930GO:GO:0005200GO:GO:0005635GO:GO:0005737GO:GO:0005819GO:GO:0005874GO:GO:0005938
GO:GO:0007020GO:GO:0007126GO:GO:0008275GO:GO:0009624GO:GO:0009898GO:GO:0015631GO:GO:0031122
GO:GO:0043015GO:GO:0051415GO:GO:0055028GO:GO:0090063GO:GO:0090307Gramene:AT5G06680.1hmmpanther:PTHR19302
hmmpanther:PTHR19302:SF14HOGENOM:HOG000007959InParanoid:Q9FG37IntAct:Q9FG37InterPro:IPR007259KEGG:ath:AT5G06680KO:K16570
ncoils:CoilOMA:IWKTMKPPANTHER:PTHR19302PaxDb:Q9FG37Pfam:PF04130Pfam:Q9FG37PhylomeDB:Q9FG37
PRIDE:Q9FG37PRO:PR:Q9FG37ProteinModelPortal:Q9FG37Proteomes:UP000006548RefSeq:NP_196286.1STRING:3702.AT5G06680.1TAIR:AT5G06680
tair10-symbols:ATGCP3tair10-symbols:ATSPC98tair10-symbols:GCP3tair10-symbols:SPC98UniGene:At.32825UniProt:Q9FG37
Coordinates (TAIR10) chr5:+:2056741..2059369
Molecular Weight (calculated) 94652.10 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.16
Length 838 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDDQQKAA DLVQELVLRL VSQNPQTPNL DPNSPAFLKT LRYAFRILSS RLTPSVLPDA TAIAESLKRR LATQGKSSDA LAFADLYTKF ASKTGPGSVN
101: NKWALVYLLK IVSDDRKSAI NGLDSSVLLP NLGIGDTGNG VLSRGEAKKK DWSNGVLLVS KDPENLRDIA FREYAILVKE ENEVTEEVLV RDVLYASQGI
201: DGKYVKFNSE IDGYAVQESV KVPRATRIMV RMLSELGWLF RKVKTFITES MDRFPAEDVG TVGQAFCAAL QDELSDYYKL LAVLEAQAMN PIPLVSESAS
301: SNNYLSLRRL SVWFAEPMVK MRLMAVLVDK CKVLRGGAMA GAIHLHAQHG DPLVHDFMMS LLRCVCSPLF EMVRSWVLEG ELEDTFGEFF VVGQPVKVDL
401: LWREGYKLHP AMLPSFISPS LAQRILRTGK SINFLRVCCD DHGWADAASE AAAASGTTTR RGGLGYGETD ALEHLVTEAA KRIDKHLLDV LYKRYKFKEH
501: CLAIKRYLLL GQGDFVQYLM DIVGPKLSEP ANNISSFELA GFLEAAIRAS NAQYDDRDML DRLRVKMMPH GSGDRGWDVF SLEYEARVPL DTVFTESVLS
601: KYLRVFNFLW KLKRVEHALI GIWKTMKPNC ITSNSFVKLQ SSVKLQLLSA LRRCQVLWNE MNHFVTNFQY YIMFEVLEVS WSNFSKEMEA AKDLDDLLAA
701: HEKYLNAIVG KSLLGEQSQT IRESLFVLFE LILRFRSHAD RLYEGIHELQ IRSKESGREK NKSQEPGSWI SEGRKGLTQR AGEFLQSMSQ DMDSIAKEYT
801: SSLDGFLSLL PLQQSVDLKF LFFRLDFTEF YSRLHSKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)