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AT5G06600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23645632 (2013): cytosol None
  • PMID:23645632 (2013): nucleus nuclear matrix
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 12
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06600-MONOMERBioCyc:ARA:GQT-714-MONOMERBioCyc:ARA:GQT-715-MONOMERBioGrid:15827
EC:3.4.19.12eggNOG:COG5077eggNOG:KOG1863EMBL:AF302663
EMBL:AF360198EMBL:AP002543EMBL:AY142616EMBL:CP002688
EnsemblPlants:AT5G06600EnsemblPlants:AT5G06600.1entrez:830548ExpressionAtlas:Q9FPT1
Gene3D:2.60.210.10GeneID:830548Genevisible:Q9FPT1GO:GO:0005829
GO:GO:0006511GO:GO:0016579GO:GO:0036459hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF445HOGENOM:HOG000160240InParanoid:Q9FPT1InterPro:IPR001394
InterPro:IPR002083InterPro:IPR008974InterPro:IPR018200InterPro:IPR024729
InterPro:IPR028889InterPro:IPR029346MEROPS:C19.A73ncoils:Coil
OMA:MANDHEAPaxDb:Q9FPT1Pfam:PF00443Pfam:PF00917
Pfam:PF12436Pfam:PF14533Pfam:Q9FPT1Pfscan:PS50144
Pfscan:PS50235PhylomeDB:Q9FPT1PRIDE:Q9FPT1PRO:PR:Q9FPT1
PROSITE:PS00972PROSITE:PS00973PROSITE:PS50144PROSITE:PS50235
ProteinModelPortal:Q9FPT1Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210RefSeq:NP_568171.1RefSeq:NP_850783.1scanprosite:PS00972
scanprosite:PS00973SMART:SM00061SMR:Q9FPT1STRING:3702.AT5G06600.1
SUPFAM:SSF49599SUPFAM:SSF54001TAIR:AT5G06600tair10-symbols:UBP12
UniGene:At.22362UniGene:At.67352UniProt:Q9FPT1
Coordinates (TAIR10) chr5:-:2019545..2027834
Molecular Weight (calculated) 130614.00 Da
IEP (calculated) 5.53
GRAVY (calculated) -0.64
Length 1116 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM
0101: YLDVSDAASL PYGWSRYAQF SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA VRKVLDYWSY DSKKETGFVG
0201: LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT
0301: VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM
0401: RDTMVKINDR YEFPLELDLD REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED LKRALEEQYG GEEELPQTNP
0501: GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR
0601: IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD
0701: PEKAVLSYAG RLMVKSSSKP MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV NKEIECLYPA VPSFLEYVQN
0801: RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL
0901: KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY
1001: HFAKETGQNQ QVQNFGEPFF LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG AFEQYLGLEH ADTTPKRAYA
1101: ANQNRHAYEK PVKIYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)