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AT5G06540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g06540-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g06540-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP002543EMBL:CP002688
EnsemblPlants:AT5G06540EnsemblPlants:AT5G06540.1entrez:830542GeneID:830542
Genevisible:Q9FG16GO:GO:0008270Gramene:AT5G06540.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF530HOGENOM:HOG000237569InParanoid:Q9FG16InterPro:IPR002885
InterPro:IPR032867KEGG:ath:AT5G06540OMA:EMFKGMLPaxDb:Q9FG16
Pfam:PF01535Pfam:PF12854Pfam:PF14432Pfam:Q9FG16
Pfscan:PS51375PhylomeDB:Q9FG16PRIDE:Q9FG16PRO:PR:Q9FG16
PROSITE:PS51375ProteinModelPortal:Q9FG16Proteomes:UP000006548RefSeq:NP_196272.1
SMR:Q9FG16STRING:3702.AT5G06540.1TAIR:AT5G06540TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65494UniProt:Q9FG16
Coordinates (TAIR10) chr5:-:1999181..2001049
Molecular Weight (calculated) 70499.00 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.04
Length 622 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNIVLNTLR FKHPKLALLQ SCSSFSDLKI IHGFLLRTHL ISDVFVASRL LALCVDDSTF NKPTNLLGYA YGIFSQIQNP NLFVFNLLIR CFSTGAEPSK
101: AFGFYTQMLK SRIWPDNITF PFLIKASSEM ECVLVGEQTH SQIVRFGFQN DVYVENSLVH MYANCGFIAA AGRIFGQMGF RDVVSWTSMV AGYCKCGMVE
201: NAREMFDEMP HRNLFTWSIM INGYAKNNCF EKAIDLFEFM KREGVVANET VMVSVISSCA HLGALEFGER AYEYVVKSHM TVNLILGTAL VDMFWRCGDI
301: EKAIHVFEGL PETDSLSWSS IIKGLAVHGH AHKAMHYFSQ MISLGFIPRD VTFTAVLSAC SHGGLVEKGL EIYENMKKDH GIEPRLEHYG CIVDMLGRAG
401: KLAEAENFIL KMHVKPNAPI LGALLGACKI YKNTEVAERV GNMLIKVKPE HSGYYVLLSN IYACAGQWDK IESLRDMMKE KLVKKPPGWS LIEIDGKINK
501: FTMGDDQKHP EMGKIRRKWE EILGKIRLIG YKGNTGDAFF DVDEEEKESS IHMHSEKLAI AYGMMKTKPG TTIRIVKNLR VCEDCHTVTK LISEVYGREL
601: IVRDRNRFHH FRNGVCSCRD YW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)