AT5G06440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 155 Blast hits to 153 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 5; Fungi - 6; Plants - 101; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1964641..1966475 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 46511.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.83 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFVLQLKHDL EDCRVMYREG LDGSPFHTLL VEGYMDGPIH ECLCVSWEST LYKKWWPQYA FPPFRILKST CLQKVGVGEQ ICLARMKVPW PLTEREMILH 101: YFSFEYFKDG LVVILLNTIS DLNSIGVSST DIIIPESPDA VRMDLVGGFV LQKVTPQRSY FRTIGDMDIK LDLMPPSLMN FISRQLIGNG FRLYKKSVAS 201: VAKFDEDYSR ALTDPLYTKI RRALYSTDEA VEEEPKLETN EVNGVTLPKH EHENNGDASV NKPVHCRRTV PEIEEEEESE ESVYSEDGNE IAKTHVDMRR 301: RFCVSPEVEQ ALGTLDRVIF MVRNITPVPE TEELSPNRAD DQAKQVSVLE NIESVPQTQE SSSDFSEEEK REEDTGQNQG MLNKGKNSSL QRKRKARCFA 401: FRSWL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)