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AT5G06300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative lysine decarboxylase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 5281 Blast hits to 5279 proteins in 1570 species: Archae - 23; Bacteria - 3686; Metazoa - 10; Fungi - 132; Plants - 400; Viruses - 0; Other Eukaryotes - 1030 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06300-MONOMERBioGrid:15797EC:3.2.2.n1eggNOG:COG1611eggNOG:ENOG410IHVEEMBL:AB006700EMBL:AK119117
EMBL:BT003704EMBL:CP002688EnsemblPlants:AT5G06300EnsemblPlants:AT5G06300.1entrez:830518GeneID:830518Genevisible:Q8GW29
GO:GO:0005634GO:GO:0005829GO:GO:0009691GO:GO:0016799Gramene:AT5G06300.1hmmpanther:PTHR31223hmmpanther:PTHR31223:SF20
HOGENOM:HOG000156894InterPro:IPR005269InterPro:IPR031100KEGG:ath:AT5G06300OMA:WIEIEERPaxDb:Q8GW29Pfam:PF03641
Pfam:Q8GW29PhylomeDB:Q8GW29PRIDE:Q8GW29PRO:PR:Q8GW29ProteinModelPortal:Q8GW29Proteomes:UP000006548RefSeq:NP_196248.3
SMR:Q8GW29STRING:3702.AT5G06300.1SUPFAM:SSF102405TAIR:AT5G06300TIGRfam:TIGR00730TIGRFAMs:TIGR00730UniGene:At.43182
UniProt:Q8GW29
Coordinates (TAIR10) chr5:-:1922042..1925278
Molecular Weight (calculated) 23890.80 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.11
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MEETKSRFKR ICVFCGSSSG KKPSYQEAAI QLGNELVERR IDLVYGGGSV GLMGLVSQAV HHGGRHVLGV IPKTLMPREI TGETIGEVKA VADMHQRKAE
101: MARQADAFIA LPGGYGTLEE LLEVITWAQL GIHRKPVGLL NVDGYYNSLL TFIDKAVDEG FISPMARRII VSAPNAKELV RQLEEYEPEF DEITSKLVWD
201: EVDRISYVPG SEVATAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)