suba logo
AT5G06265.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hyaluronan mediated motility receptor-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hyaluronan mediated motility receptor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTKUeggNOG:ENOG410YYVUEMBL:AY086675EMBL:CP002688
EnsemblPlants:AT5G06265EnsemblPlants:AT5G06265.1EnsemblPlants:AT5G06265.2EnsemblPlants:AT5G06265.3
entrez:830514GeneID:830514Gramene:AT5G06265.1Gramene:AT5G06265.2
Gramene:AT5G06265.3hmmpanther:PTHR34564hmmpanther:PTHR34564:SF4HOGENOM:HOG000242229
KEGG:ath:AT5G06265ncoils:CoilOMA:QCRNENQPhylomeDB:Q8LCC6
Proteomes:UP000006548RefSeq:NP_001119178.1RefSeq:NP_001190240.1RefSeq:NP_568165.1
TAIR:AT5G06265UniGene:At.32876UniProt:Q8LCC6
Coordinates (TAIR10) chr5:+:1906596..1907382
Molecular Weight (calculated) 12583.20 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.43
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRSWVLLFV LMFIVLTSQF EWNEQVENES ETSSRPLILS DKEQQHIPQG KESVQVKKIL FQEKKIQKLN ELVRDLRRQL LQCRNENQVE LTELETELDQ
101: LLVTGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)