AT5G06260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TLD-domain containing nucleolar protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TLD-domain containing nucleolar protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1902755..1904835 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47426.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||
| Length | 424 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNSNSSSVD HRFISASRAF TQKKLDDLKS LFVSLASNSQ SNDQYVSYPV FQEYFGLSGS LGERMFDMVT QRRKDDKMTY EDLVIAKATY EKGTDDEIAE 101: FIYQTLDVNG NGVLSRSDLE SFLVVILKSV FSTESSDAES SDYKKMVDAL LNAATFSKSD DGSEKGMSFE DFRSWCSFVP TIRKFLGSLL MPPSTVRPGY 201: QVPHLLYEDS VSSDRLLLKK EYAWHIGGAL PHHELVEWKL LYHSSVHGQS FNTFLGHTSN TGMSASVLII KDTEGYVYGG YASQPWERYS DFYGDMKSFL 301: FQLNPKAAIY RPTGANTNIQ WCATNFTSEN IPNGIGFGGK INHFGLFISA SFDQGQTFEC TTFGSPSLSK TSRIQPEVIE CWGIVQASNE QDTKHNAMKG 401: TVLERFKEDR NMLKLVGMAG NSND |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)