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AT5G06250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G11580.1); Has 1353 Blast hits to 1351 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G06250EnsemblPlants:AT5G06250.1entrez:830512hmmpanther:PTHR31140hmmpanther:PTHR31140:SF2Pfam:PF02362Pfscan:PS50863
Coordinates (TAIR10) chr5:-:1892714..1894058
Molecular Weight (calculated) 29998.60 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.58
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVNHYSTDH HHTLLWQQQQ HRHTTDTSET TTTATWLHDD LKESLFEKSL TPSDVGKLNR LVIPKQHAEK YFPLNAVLVS SAAADTSSSE KGMLLSFEDE
101: SGKSWRFRYS YWNSSQSYVL TKGWSRFVKD KQLDPGDVVF FQRHRSDSRR LFIGWRRRGQ GSSSSVAATN SAVNTSSMGA LSYHQIHATR AAVATAAETH
201: STPSSSVVGS SRTVRLFGVN LECQMDENDG DDSVAVATTV ESPDGYYGQN MYYYYSHPHN MVILTLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)