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AT5G06200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.980
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G11550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DIP:DIP-59180NeggNOG:ENOG410JBUMeggNOG:ENOG411190ZEMBL:AP002544
EMBL:CP002688EnsemblPlants:AT5G06200EnsemblPlants:AT5G06200.1entrez:830507
GeneID:830507Genevisible:Q9FFZ7GO:GO:0005829GO:GO:0005886
GO:GO:0007043GO:GO:0016021GO:GO:0016226GO:GO:0042545
GO:GO:0042803GO:GO:0048226GO:GO:0051536Gramene:AT5G06200.1
hmmpanther:PTHR11615hmmpanther:PTHR11615:SF116HOGENOM:HOG000237690InParanoid:Q9FFZ7
InterPro:IPR006459InterPro:IPR006702KEGG:ath:AT5G06200OMA:PICLQFH
PaxDb:Q9FFZ7Pfam:PF04535Pfam:Q9FFZ7PhylomeDB:Q9FFZ7
PRIDE:Q9FFZ7PRO:PR:Q9FFZ7Proteomes:UP000006548RefSeq:NP_196238.1
STRING:3702.AT5G06200.1TAIR:AT5G06200TIGRfam:TIGR01569TIGRFAMs:TIGR01569
TMHMM:TMhelixUniGene:At.54744UniProt:Q9FFZ7
Coordinates (TAIR10) chr5:+:1877333..1878116
Molecular Weight (calculated) 21112.80 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.78
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSDSIAVDV PAESSSVIKG KAPLLGLARD HTGSGGYKRG LSIFDFLLRL AAIVAALAAA ATMGTSDETL PFFTQFLQFE ASYDDLPTFQ FFVVAIAIVA
101: GYLVLSLPFS VVTIVRPLAV APRLLLLVLD TAALALDTAA ASAAAAIVYL AHNGNTNTNW LPICQQFGDF CQKTSGAVVS AFASVTFLAI LVVISGVSLK
201: RP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)