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AT5G06180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1022)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1022); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1022 (InterPro:IPR009367); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1022) (TAIR:AT5G22350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3660eggNOG:ENOG410IJIXEMBL:AK317011EMBL:AY084218
EMBL:BT026438EMBL:CP002688EnsemblPlants:AT5G06180EnsemblPlants:AT5G06180.1
EnsemblPlants:AT5G06180.2entrez:830505GeneID:830505Gramene:AT5G06180.1
Gramene:AT5G06180.2hmmpanther:PTHR33986hmmpanther:PTHR33986:SF2InterPro:IPR009367
KEGG:ath:AT5G06180OMA:WHDELANPfam:PF06258PhylomeDB:Q8LGK6
Proteomes:UP000006548RefSeq:NP_568162.1RefSeq:NP_974738.1SUPFAM:SSF53756
TAIR:AT5G06180UniGene:At.28498UniGene:At.66666UniProt:Q8LGK6
Coordinates (TAIR10) chr5:+:1873197..1875352
Molecular Weight (calculated) 44983.50 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.14
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRTQPRELA VTGLSENLQG CVFRTVKRAV LIGNGCAGAE NQCIGLLRSL GLFDRHLYYR VAKPRGGILQ WLPISLYKRI HRFISTICAG LSINATGITN
101: VFEVDDAKQI AAMARKTFEK NGPLLVVASG SDTISVASSI RRLAMENVFV VQVQHPRSHL ERFDLVITPQ HDYFSLTPEG KRQIPFFLRP WVTPREHPGR
201: NVFLTTGALH YADASTLRNA TSEWKNEFAS LPKPLVVVNI GGPTRNCLYG VDLAKQLCGM LQSILWSCGS LRISFSRRTP KKVVEVITGE LSSNSKVYIW
301: DGKDPNPHLG HLALANTFII TADSISMLSE ACSTGKPVYV VGAERCTWKF SDFQKTLHGR GAVRPLTGKE DMCEKWSYSP LNDNVEAARR VIQDLAKRGW
401: EIEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)