suba logo
AT5G06160.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : splicing factor-related
Curator
Summary (TAIR10)
Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate. Expressed strongly in gametophytes and weakly in sporophytes.
Computational
Description (TAIR10)
ATROPOS (ATO); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of embryo sac egg cell differentiation; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type matrin (InterPro:IPR000690), Splicing factor SF3a60 binding domain (InterPro:IPR021966); Has 679 Blast hits to 673 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 330; Fungi - 136; Plants - 106; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5188eggNOG:KOG2636EMBL:AP002544EMBL:AY039944EMBL:AY113862EMBL:CP002688EnsemblPlants:AT5G06160
EnsemblPlants:AT5G06160.1entrez:830503GeneID:830503GO:GO:0000398GO:GO:0003723GO:GO:0005681GO:GO:0005829
GO:GO:0008270GO:GO:0045694Gramene:AT5G06160.1hmmpanther:PTHR12786hmmpanther:PTHR12786:SF2HOGENOM:HOG000160935IntAct:Q9FG01
InterPro:IPR000690InterPro:IPR021966InterPro:IPR024598InterPro:IPR031774InterPro:IPR031776KEGG:ath:AT5G06160KO:K12827
ncoils:CoilOMA:DHEIAHFPANTHER:PTHR12786:SF2Pfam:PF11931Pfam:PF12108Pfam:PF13297Pfam:PF16837
Pfscan:PS50171PhylomeDB:Q9FG01PROSITE:PS50171Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_196234.3SMR:Q9FG01
STRING:3702.AT5G06160.1TAIR:AT5G06160tair10-symbols:ATOUniGene:At.8012UniProt:Q9FG01
Coordinates (TAIR10) chr5:-:1862623..1866298
Molecular Weight (calculated) 58975.30 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.90
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTLLEQTR SNHEEVERLE RLVVEDLQKE PPSSKDRLVQ GHRVRHMIES IMLTTEKLVE TYEDKDGAWD DEIAALGGQT ATGTNVFSEF YDRLKEIREY
101: HKRHPSGRLV DANEDYEARL KEEPIIAFSG EEGNGRYLDL HDMYNQYINS KFGERVEYSA YLDVFSQPEK IPRKLKLSRQ YMKYMEALLE YLVYFFQRTE
201: PLQDLDRILS KVCSDFEEQY ADGIVEGLDN ELIPSQHTVI DLDYYSTVEE LVDVGPEKLK EALGALGLKV GGTPQQRAER LFLTKHTPLE KLDKKHFARP
301: PHNGKQNGDA KSTHESENAK EIALTEAKVK KLCNLLDETI ERTKQNIVKK QSLTYEEMEG EREGEEANTE LESDDEDGLI YNPLKLPIGW DGKPIPYWLY
401: KLHGLGQEFK CEICGNYSYW GRRAFERHFK EWRHQHGMRC LGIPNTKNFN EITSIEEAKE LWKRIQERQG VNKWRPELEE EYEDREGNIY NKKTYSDLQR
501: QGLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)