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AT5G06140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19796370 (2010): Golgi trans-Golgi network early endosome
  • PMID:16936718 (2006): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : sorting nexin 1
Curator
Summary (TAIR10)
Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.
Computational
Description (TAIR10)
sorting nexin 1 (SNX1); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: in 7 processes; LOCATED IN: endosome, microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2B (TAIR:AT5G07120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15780eggNOG:COG5391eggNOG:KOG2273EMBL:AP002030EMBL:AP002544EMBL:AY080809EMBL:BT029777
EMBL:CP002688EnsemblPlants:AT5G06140EnsemblPlants:AT5G06140.1entrez:830501Gene3D:3.30.1520.10GeneID:830501Genevisible:Q9FG38
GO:GO:0005768GO:GO:0005771GO:GO:0005794GO:GO:0005829GO:GO:0006623GO:GO:0006896GO:GO:0006897
GO:GO:0008333GO:GO:0009958GO:GO:0010252GO:GO:0016020GO:GO:0016050GO:GO:0019898GO:GO:0030904
GO:GO:0031902GO:GO:0035091GO:GO:0043231GO:GO:0048364Gramene:AT5G06140.1hmmpanther:PTHR10555hmmpanther:PTHR10555:SF122
HOGENOM:HOG000238494InParanoid:Q9FG38IntAct:Q9FG38InterPro:IPR001683InterPro:IPR015404InterPro:IPR033241iPTMnet:Q9FG38
KEGG:ath:AT5G06140KO:K17917ncoils:CoilOMA:SLDNTQNPANTHER:PTHR10555:SF122PaxDb:Q9FG38Pfam:PF00787
Pfam:PF09325Pfam:Q9FG38Pfscan:PS50195PhylomeDB:Q9FG38PRIDE:Q9FG38PRO:PR:Q9FG38PROSITE:PS50195
ProteinModelPortal:Q9FG38Proteomes:UP000006548RefSeq:NP_196232.1SMART:SM00312SMR:Q9FG38STRING:3702.AT5G06140.1SUPFAM:SSF103657
SUPFAM:SSF64268TAIR:AT5G06140tair10-symbols:ATSNX1tair10-symbols:SNX1UniGene:At.27700UniProt:Q9FG38
Coordinates (TAIR10) chr5:-:1856212..1858752
Molecular Weight (calculated) 46525.70 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.58
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MESTEQPRNI SGSMQSPRSP SSHPYLSVSV TDPVKLGNGV QAYISYRVIT KTNLPEYQGP EKIVIRRYSD FVWLRDRLFE KYKGIFIPPL PEKSAVEKFR
101: FSAEFIEMRR AALDIFVNRI ALHPELQQSE DLRTFLQADE ETMDRFRFQE TSIFKKPADL MQMFRDVQSK VSDAVLGKEK PVEETTADYE KLKHYIFELE
201: NHLTEAQKHA YRLVKRHREL GQSLLDFGKA VKLLGACEGE PTGKAFSDLG TKSELLSIKL QKEAQQVLMN FEEPLKDYVR YVQSIKATIA ERGTAFKQHC
301: ELSETTKLKE INLDKLMLTR SDKVGEAEIE YREIKAESEE ATRRFERIVK RMEDEIVRFQ EQKTEEMGVA FHQFAKGQAR LANSVADAWR SLLPKLEASY
401: SV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)