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AT5G06120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.967
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04490.1); Has 572 Blast hits to 534 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 294; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRPReggNOG:KOG1410EMBL:CP002688EnsemblPlants:AT5G06120EnsemblPlants:AT5G06120.1entrez:830499ExpressionAtlas:F4K2C1
Gene3D:1.25.10.10GeneID:830499GO:GO:0005622GO:GO:0006886Gramene:AT5G06120.1hmmpanther:PTHR12596hmmpanther:PTHR12596:SF2
InParanoid:F4K2C1InterPro:IPR001494InterPro:IPR011989InterPro:IPR016024ncoils:CoilOMA:KCQWSLSPaxDb:F4K2C1
Pfam:PF03810PRIDE:F4K2C1ProteinModelPortal:F4K2C1Proteomes:UP000006548RefSeq:NP_196230.2SMART:SM00913STRING:3702.AT5G06120.1
SUPFAM:SSF48371TAIR:AT5G06120UniGene:At.23053UniProt:F4K2C1
Coordinates (TAIR10) chr5:+:1844797..1852601
Molecular Weight (calculated) 121195.00 Da
IEP (calculated) 6.64
GRAVY (calculated) 0.02
Length 1066 amino acids
Sequence (TAIR10)
(BLAST)
0001: MQNSALLPME SLAQLEAMCE RLYNSQDSAE RAHAENSLRC FSVNTDYISQ CQYILDNSSK PYSLMLASSS LLKQVTDHTL PLNLRLDIRA YIVNYLATRG
0101: PKMQSFVIAS LIQLLCRLTK FGWLDDDRFR DVVKESTNFL EQGSSDHYAI GLRILDQLVQ EMNQPNPGLP STHHRRVACN FRDQSLFQVF RIALTSLSYL
0201: KNDAAGRLQE LALSLALRCV SFDFVGTSID ESTEEFGTVQ IPTSWRSVLE DSSTLQIFFD YYGSTESPLS KEALECLVRL ASVRRSLFTN DATRSNFLAH
0301: LMTGTKEILQ TGKGLADHDN YHVFCRLLGR FRLNYQLSEL VKMEGYGEWI QLVAEFTLKS LQSWQWASSS VYYLLGMWSR LVASVPYLKG DSPSLLDEFV
0401: PKITEGFIIS RFNSVQASVP DDPTDHPLDK VEVLQDELDC FPYLCRFQYE RTGMYIINTM EPLLQSYTER GQLQFADNSE LALIEAKLSW IVHIVAAIVK
0501: IKQCSGCSVE TQEVLDAELS ARVLRLVNVM DSGLHRQRYG EISKQRLDRA ILTFFQNFRK SYVGDQAMHS SKLYARLKEL LGLHDHLVLL NVIVGKIATN
0601: LKCYTESEEV INHTLSLFLE LASGYMTGKL LLKLDTVTFI ISNHTREQFP FLEEYRCSRS RTTFYYTIGW LIFMEDSLIK FKTSMEPLLQ VFRTLESTPD
0701: SMFRTDAVKF ALIGLMRDLR GIAMATSSRR SYGFLFDWLY PAHMPLLLRG VSHWFDTPEV TTPLLKFMAE FVHNKTQRLT FDSSSPNGIL LFREVSKLIV
0801: AYGSRILALP NVADIYAFKY KGIWVSLTIL SRALSGNYCN FGVFELYGDR ALADALDIAL KMTLAIPLAD ILAYRKLTKA YFGFVEVLCA SHITFILKLD
0901: TATFMHLVGS LESGLKGLDT SISSQCAIAV DNLASYYFNN ITMGEAPTTP AAIRFAQHIA DCPSLFPEIL KTLFEIVLFE DCGNQWSLSR PMLSLILISE
1001: QIFSDLKAKI LSSQSIILMV QPADQHQRLS ACFDSLMTDI SRGLDSKNRD KFTQNLTLFR HEFRVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)