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AT5G06110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DnaJ domain ;Myb-like DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DnaJ domain ;Myb-like DNA-binding domain; FUNCTIONS IN: heat shock protein binding, DNA binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: DnaJ domain ;Myb-like DNA-binding domain (TAIR:AT3G11450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AP002030EMBL:CP002688
EnsemblPlants:AT5G06110EnsemblPlants:AT5G06110.1EnsemblPlants:AT5G06110.2entrez:830498
Gene3D:1.10.10.60Gene3D:1.10.287.110GeneID:830498GO:GO:0003677
GO:GO:0051301Gramene:AT5G06110.1Gramene:AT5G06110.2hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF310HOGENOM:HOG000006900IntAct:Q9LHS5InterPro:IPR001005
InterPro:IPR001623InterPro:IPR009057InterPro:IPR017877InterPro:IPR018253
KEGG:ath:AT5G06110KO:K09522ncoils:CoilOMA:HIEANGH
Pfam:PF00226Pfam:PF00249Pfscan:PS50076Pfscan:PS50090
PhylomeDB:Q9LHS5PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076
PROSITE:PS50090Proteomes:UP000006548Reactome:R-ATH-3371453RefSeq:NP_001190234.1
RefSeq:NP_196229.1scanprosite:PS00636SMART:SM00271SMART:SM00717
SMR:Q9LHS5STRING:3702.AT5G06110.1SUPFAM:SSF46565SUPFAM:SSF46689
TAIR:AT5G06110UniGene:At.32898UniProt:Q9LHS5
Coordinates (TAIR10) chr5:-:1841009..1843000
Molecular Weight (calculated) 75637.00 Da
IEP (calculated) 8.94
GRAVY (calculated) -1.05
Length 663 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSWGINSAI KLLTYSSELK DGQALYASSN CHPVKALNRE PAGHAFHSAA LKLRGCAKEA TSKNEDTDKK VPKEKDGEYI PSYDSHNIKG KKKSGKLQHD
101: HYALLGLGNL RYLATDDQIR KSYRDAALKH HPDKLATLLL LEETEEAKQA KKDEIESHFK LIQEAYEVLM DSTKRRIFDS TDEFDDKVPT DCAPQDFFKV
201: FGPAFKRNAR WSNSPLPDLG DENTPLKEVD RFYSTWYTFK SWREFPEEEE HDIEQAESRE EKRWMERENA RKTQKARKEE YARIRTLVDN AYKKDIRIQK
301: RKDDEKAKKL QKKEAKVMAK RQQEEAAAAA IEEEKRRKEE EAKRAAEAAQ LHKRAKEREK KLLRKERSRL RVLSAPVLSQ RLLGISDEHV EDLCMSLNTE
401: QLRKLCDKME NKEGMALAKV IKNGSNIDDD KIEIEEEEVQ VAVKQNGHIE ANGHVEANGH VEAKVDTATH EKKEKPWSKE EIDMLRKGTT KFPKGTSQRW
501: EVISEYIGTG RSVEEILKAT KTVLLQKPDS AKAFDSFLEN RKPAASINSP LSTREELGEP IIPTKAHEDN NSTKTETAEQ NGKTKENNNS NGNSEPAAAS
601: GSDPDGWSAV QERALVQALK TFPKETNQRW ERVATAVPGK TMNQCKKKFA DLKDVIRTKK PTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)