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AT5G05960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G53980.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0BSeggNOG:ENOG410YQ10EMBL:AY086919EMBL:BT024550EMBL:CP002688EnsemblPlants:AT5G05960EnsemblPlants:AT5G05960.1
entrez:830481GeneID:830481Gramene:AT5G05960.1hmmpanther:PTHR33122hmmpanther:PTHR33122:SF6InterPro:IPR016140KEGG:ath:AT5G05960
OMA:CAQVRAIPfam:PF14368PhylomeDB:Q8LBY9Proteomes:UP000006548RefSeq:NP_568160.1SMR:Q8LBY9STRING:3702.AT5G05960.1
SUPFAM:SSF47699TAIR:AT5G05960UniGene:At.43072UniGene:At.66777UniProt:Q8LBY9
Coordinates (TAIR10) chr5:+:1790256..1790694
Molecular Weight (calculated) 12443.50 Da
IEP (calculated) 9.21
GRAVY (calculated) 0.12
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: METHVLSRIF LLVLCIYSLK TMVYGAGECG RNPPDREAIK LAPCAMAAQD TSAKVSAICC ARVKQMGQNP KCLCAVMLSS TARSSGAKPE ISMTIPKRCN
101: IANRPVGYKC GAYTLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)