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AT5G05820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotide-sugar transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G11320.1); Has 3144 Blast hits to 3139 proteins in 327 species: Archae - 14; Bacteria - 156; Metazoa - 754; Fungi - 474; Plants - 1369; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink).
Protein Annotations
BioGrid:15746eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AB005237
EMBL:BT014979EMBL:BT015715EMBL:CP002688EnsemblPlants:AT5G05820
EnsemblPlants:AT5G05820.1entrez:830467GeneID:830467Genevisible:Q6DBP3
GO:GO:0005794GO:GO:0008643GO:GO:0016021Gramene:AT5G05820.1
hmmpanther:PTHR11132hmmpanther:PTHR11132:SF104HOGENOM:HOG000239973InParanoid:Q6DBP3
InterPro:IPR004853KEGG:ath:AT5G05820OMA:ALPPIEFPaxDb:Q6DBP3
Pfam:PF03151Pfam:Q6DBP3PhylomeDB:Q6DBP3PRIDE:Q6DBP3
PRO:PR:Q6DBP3ProteinModelPortal:Q6DBP3Proteomes:UP000006548RefSeq:NP_196201.2
STRING:3702.AT5G05820.1SUPFAM:0043518TAIR:AT5G05820TMHMM:TMhelix
UniGene:At.43263UniProt:Q6DBP3
Coordinates (TAIR10) chr5:-:1752106..1753857
Molecular Weight (calculated) 33901.60 Da
IEP (calculated) 10.23
GRAVY (calculated) 0.83
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMATNGRFF TIGLVASWYS SNIGVLLLNK YLLSNYGFKY PIFLTMCHMT ACSLLSYVAI AWLKMVPMQT IRSRVQFFKI AALSLVFCVS VVFGNISLRF
101: LPVSFNQAIG ATTPFFTAVF AYLMTRKKEA WLTYFTLVPV VTGVVIASGG EPSFHLFGFL MCIAATAARA LKSVLQGILL SSEGEKLNSM NLLLYMAPIA
201: VVLLLPATLI MEKNVVGITI ALARDDFRIV WYLLFNSALA YLVNLTNFLV TNHTSALTLQ VLGNAKGAVA VVVSILIFKN PVSVTGMLGY SLTVCGVILY
301: SEAKKRNKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)