suba logo
AT5G05790.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT3G11280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INUSeggNOG:ENOG410ZCYVEMBL:AB005237EMBL:AY519531EMBL:BT026054EMBL:CP002688EnsemblPlants:AT5G05790
EnsemblPlants:AT5G05790.1entrez:830464Gene3D:1.10.10.60GeneID:830464GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT5G05790.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF261HOGENOM:HOG000237920InterPro:IPR001005
InterPro:IPR006447InterPro:IPR009057InterPro:IPR017884InterPro:IPR017930KEGG:ath:AT5G05790OMA:PNGARGFPfam:PF00249
Pfscan:PS51293Pfscan:PS51294PhylomeDB:Q9FFJ9PROSITE:PS51293PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_196198.1
SMART:SM00717SMR:Q9FFJ9SUPFAM:SSF46689TAIR:AT5G05790TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.32952
UniProt:Q9FFJ9
Coordinates (TAIR10) chr5:-:1740724..1741671
Molecular Weight (calculated) 31378.00 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.64
Length 277 amino acids
Sequence (TAIR10)
(BLAST)
001: METLHPLLSH VPTSDHRFVV QEMMCLQSSS WTKEENKKFE RALAVYADDT PDRWFKVAAM IPGKTISDVM RQYSKLEEDL FDIEAGLVPI PGYRSVTPCG
101: FDQVVSPRDF DAYRKLPNGA RGFDQDRRKG VPWTEEEHRR FLLGLLKYGK GDWRNISRNF VGSKTPTQVA SHAQKYYQRQ LSGAKDKRRP SIHDITTVNL
201: LNANLSRPSS DHGCLVSKQA EPKLGFTDRD NAEEGVMFLG QNLSSVFSSY DPAIKFSGAN VYGEGGYCIS QDLETRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)