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AT5G05760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 31
Curator
Summary (TAIR10)
A SNARE protein (ortholog of syntaxin 5), a membrane fusion machine component involved in cytokinesis
Computational
Description (TAIR10)
syntaxin of plants 31 (SYP31); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 32 (TAIR:AT3G24350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15740eggNOG:ENOG410Y2MBeggNOG:KOG0812EMBL:AB005237EMBL:AF051853EMBL:AY054184EMBL:AY066041
EMBL:CP002688EnsemblPlants:AT5G05760EnsemblPlants:AT5G05760.1entrez:830461GeneID:830461Genevisible:Q9FFK1GO:GO:0000139
GO:GO:0000149GO:GO:0005768GO:GO:0006886GO:GO:0006888GO:GO:0006906GO:GO:0009504GO:GO:0016021
GO:GO:0031201GO:GO:0043231GO:GO:0048278Gramene:AT5G05760.1hmmpanther:PTHR19957hmmpanther:PTHR19957:SF117HOGENOM:HOG000194860
InParanoid:Q9FFK1IntAct:Q9FFK1InterPro:IPR000727InterPro:IPR006012InterPro:IPR010989KEGG:ath:AT5G05760KO:K08490
OMA:PIMEIQEPaxDb:Q9FFK1Pfam:PF05739Pfam:Q9FFK1Pfscan:PS50192PhylomeDB:Q9FFK1PRIDE:Q9FFK1
PRO:PR:Q9FFK1PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q9FFK1Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530
Reactome:R-ATH-6807878RefSeq:NP_196195.1scanprosite:PS00914SMART:SM00397SMR:Q9FFK1STRING:3702.AT5G05760.1SUPFAM:SSF47661
TAIR:AT5G05760tair10-symbols:ATSED5tair10-symbols:ATSYP31tair10-symbols:SED5tair10-symbols:SYP31TMHMM:TMhelixUniGene:At.28605
UniGene:At.69918UniProt:Q9FFK1
Coordinates (TAIR10) chr5:-:1729111..1730903
Molecular Weight (calculated) 37313.70 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.40
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)