AT5G05740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ethylene-dependent gravitropism-deficient and yellow-green-like 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ethylene-dependent gravitropism-deficient and yellow-green-like 2 (EGY2); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50 (InterPro:IPR008915); BEST Arabidopsis thaliana protein match is: Peptidase M50 family protein (TAIR:AT5G35220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1724023..1726859 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60067.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 556 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLAVASFRG NFGVLSQCSS CCSLQFQPFV AATSSLNFGQ TGTSRRKKDL KLERVFRKRE TLVRVTETQT EPEGNDDEDN KEGKESSADD PPTKIPTELN 101: SQSTVVNEAP GNEEENKAQF SSQDGDKLEV SSGSPLPGVN VSIIIHVIYK DDSIMFSGCL SFIKSCCEQP LQLDDSMRLP KETIDILRGQ VFGFDTFFVT 201: SQEPYEGGVL FKGNLRGKPA TSYEKIKTRM ENNFGDQYKL FLLTNPEDDK PVAVVVPRRS LEPETTAVPE WFAAGSFGLV ALFTLFLRNV PALQSDLLSA 301: FDNLELLKDG LPGALVTALV LGVHELGHIL VANSLGIKLG VPFFVPSWQI GSFGAITRIK NIVAKREDLL KVAAAGPLAG FSLGLILFLI GLFVPPSDGI 401: GVVVDASVFH ESFLAGGIAK LLLGDALKEG TSISLNPLVI WAWAGLLING INSIPAGELD GGKIAFSIWG RKTATRLTGA SIALLGLSAL FSDVAFYWVV 501: LIFFLQRGPI APLAEEITVP DDKYVSLGIL VLFLSLLVCL PYPFAFTGNE AMMIGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)