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AT5G05710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.890
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pleckstrin homology (PH) domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pleckstrin homology (PH) domain superfamily protein; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: pleckstrin homologue 1 (TAIR:AT2G29700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXIKeggNOG:ENOG4111M41EMBL:AB005237EMBL:AK228937EMBL:BT025503EMBL:CP002688EnsemblPlants:AT5G05710
EnsemblPlants:AT5G05710.1entrez:830455Gene3D:2.30.29.30GeneID:830455Gramene:AT5G05710.1hmmpanther:PTHR22903hmmpanther:PTHR22903:SF18
InterPro:IPR001849InterPro:IPR011993KEGG:ath:AT5G05710OMA:KLFWFKEPfam:PF00169Pfscan:PS50003PhylomeDB:Q9FFK5
PROSITE:PS50003Proteomes:UP000006548RefSeq:NP_196190.1SMART:SM00233SMR:Q9FFK5SUPFAM:SSF50729TAIR:AT5G05710
UniGene:At.32962UniProt:Q9FFK5
Coordinates (TAIR10) chr5:+:1715943..1716377
Molecular Weight (calculated) 16730.50 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.78
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLWRAVIG GQNNNSEDYG GVEFWSNPER TGWLTKQGEY IKTWRRRWFV LKQGKLFWFK DSDVTRVSRP RGVVPVESCL TAKGAEDVLN KQNAFELSTR
101: NETMYFIADS EKEKEDWINS IGRSIVQNSR SVTDSEIVDY DNKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)