AT5G05660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a homolog of the mammalian zinc finger transcription factor NF-X1. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATNFXL2; FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: NF-X-like 1 (TAIR:AT1G10170.1); Has 10412 Blast hits to 5299 proteins in 265 species: Archae - 4; Bacteria - 94; Metazoa - 8397; Fungi - 425; Plants - 250; Viruses - 11; Other Eukaryotes - 1231 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1691113..1695464 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98887.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 880 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGTATTEFR WKSPPQPPSQ EQPISDSDSD SGSDSENHQH RHNDLSNSIF EAYLDCHSSS SPSSIDLAKI QSFLASSSSG AVSCLICLER IKRTDPTWSC 101: TSSCFAVFHL FCIQSWARQC LDLQAARAVT RPSSNPTEPE AVWNCPKCRS SYQKSKIPRR YLCYCGKEED PPADNPWILP HSCGEVCERP LSNNCGHCCL 201: LLCHPGPCAS CPKLVKAKCF CGGVEDVRRC GHKQFSCGDV CERVLDCNIH NCREICHDGE CPPCRERAVY KCSCGKVKEE KDCCERVFRC EASCENMLNC 301: GKHVCERGCH AGECGLCPYQ GKRSCPCGKR FYQGLSCDVV APLCGGTCDK VLGCGYHRCP ERCHRGPCLE TCRIVVTKSC RCGVTKKQVP CHQELACERK 401: CQRVRDCARH ACRRRCCDGE CPPCSEICGK KLRCRNHKCQ SPCHQGPCAP CPIMVTISCA CGETHFEVPC GTETNQKPPR CRKLCHITPL CRHGQNQKPH 501: KCHYGACPPC RLLCDEEYPC GHKCKLRCHG PRPPPNREFI LKPTKKMLHI QAESTPGSPC PRCPEPVWRP CVGHHLAAEK RMICSDRTQF ACDNLCGNPL 601: PCGNHYCSYF CHALDIRSSS LDKRSESCEK CDLRCQKERT PRCQHPCPRR CHPEDCPPCK TLVKRSCHCG AMVHAFECIY YNTMSEKDQM KARSCRGPCH 701: RKLPNCTHLC PEICHPGQCP LPEKCGKKVV VRCKCLTLKK EWVCQDVQAA HRATGSDPKE VPKNQFGVGL LPCDSNCKSK LQVAESVLTQ RNVKEIEEKE 801: EPSGKNASKR RKRRGRGQDI QETTRLQKLA VTTKRILMVV MLVAMLAAVS YYGYKGLLWL SDWMNEVEEQ RQKSRRYPRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)