suba logo
AT5G05660.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Encodes a homolog of the mammalian zinc finger transcription factor NF-X1.
Computational
Description (TAIR10)
ATNFXL2; FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: NF-X-like 1 (TAIR:AT1G10170.1); Has 10412 Blast hits to 5299 proteins in 265 species: Archae - 4; Bacteria - 94; Metazoa - 8397; Fungi - 425; Plants - 250; Viruses - 11; Other Eukaryotes - 1231 (source: NCBI BLink).
Protein Annotations
BioGrid:15729EC:6.3.2.-eggNOG:ENOG410XR02eggNOG:KOG1952EMBL:AB005237EMBL:AK228690EMBL:CP002688
EnsemblPlants:AT5G05660EnsemblPlants:AT5G05660.1entrez:830450GeneID:830450Genevisible:Q9FFK8GO:GO:0003700GO:GO:0005634
GO:GO:0008270GO:GO:0009651GO:GO:0010310GO:GO:0016021GO:GO:0016567GO:GO:0016874GO:GO:0048511
Gramene:AT5G05660.1hmmpanther:PTHR12360HOGENOM:HOG000031224InParanoid:Q9FFK8InterPro:IPR000967InterPro:IPR019786KEGG:ath:AT5G05660
KO:K15683ncoils:CoilPaxDb:Q9FFK8Pfam:PF01422Pfam:Q9FFK8PRIDE:Q9FFK8PRO:PR:Q9FFK8
PROSITE:PS00197PROSITE:PS01359ProteinModelPortal:Q9FFK8Proteomes:UP000006548RefSeq:NP_196185.3scanprosite:PS01359SMART:SM00438
STRING:3702.AT5G05660.1TAIR:AT5G05660tair10-symbols:ATNFXL2TMHMM:TMhelixUniGene:At.32970UniPathway:UPA00143UniProt:Q9FFK8
Coordinates (TAIR10) chr5:-:1691113..1695464
Molecular Weight (calculated) 98887.30 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.60
Length 880 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGTATTEFR WKSPPQPPSQ EQPISDSDSD SGSDSENHQH RHNDLSNSIF EAYLDCHSSS SPSSIDLAKI QSFLASSSSG AVSCLICLER IKRTDPTWSC
101: TSSCFAVFHL FCIQSWARQC LDLQAARAVT RPSSNPTEPE AVWNCPKCRS SYQKSKIPRR YLCYCGKEED PPADNPWILP HSCGEVCERP LSNNCGHCCL
201: LLCHPGPCAS CPKLVKAKCF CGGVEDVRRC GHKQFSCGDV CERVLDCNIH NCREICHDGE CPPCRERAVY KCSCGKVKEE KDCCERVFRC EASCENMLNC
301: GKHVCERGCH AGECGLCPYQ GKRSCPCGKR FYQGLSCDVV APLCGGTCDK VLGCGYHRCP ERCHRGPCLE TCRIVVTKSC RCGVTKKQVP CHQELACERK
401: CQRVRDCARH ACRRRCCDGE CPPCSEICGK KLRCRNHKCQ SPCHQGPCAP CPIMVTISCA CGETHFEVPC GTETNQKPPR CRKLCHITPL CRHGQNQKPH
501: KCHYGACPPC RLLCDEEYPC GHKCKLRCHG PRPPPNREFI LKPTKKMLHI QAESTPGSPC PRCPEPVWRP CVGHHLAAEK RMICSDRTQF ACDNLCGNPL
601: PCGNHYCSYF CHALDIRSSS LDKRSESCEK CDLRCQKERT PRCQHPCPRR CHPEDCPPCK TLVKRSCHCG AMVHAFECIY YNTMSEKDQM KARSCRGPCH
701: RKLPNCTHLC PEICHPGQCP LPEKCGKKVV VRCKCLTLKK EWVCQDVQAA HRATGSDPKE VPKNQFGVGL LPCDSNCKSK LQVAESVLTQ RNVKEIEEKE
801: EPSGKNASKR RKRRGRGQDI QETTRLQKLA VTTKRILMVV MLVAMLAAVS YYGYKGLLWL SDWMNEVEEQ RQKSRRYPRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)