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AT5G05640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleoprotein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleoprotein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB005237EMBL:BT020241EMBL:BT020572EMBL:CP002688
EnsemblPlants:AT5G05640EnsemblPlants:AT5G05640.1entrez:830447GeneID:830447
GO:GO:0016020GO:GO:0019013Gramene:AT5G05640.1HOGENOM:HOG000152443
KEGG:ath:AT5G05640OMA:HKLPIAMPhylomeDB:Q9FFL0Proteomes:UP000006548
RefSeq:NP_196183.1SMR:Q9FFL0STRING:3702.AT5G05640.1TAIR:AT5G05640
UniGene:At.50434UniProt:Q9FFL0
Coordinates (TAIR10) chr5:+:1684606..1685577
Molecular Weight (calculated) 36136.60 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.09
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEALSEALS SFDFDELVAS LADAIAATST PKPLVEFSLH ALMAELFKRT KTLPKAEVSR TFFRAVSIGL LRGNIRKDQL ERTCDAGKAI IKRVAAILGI
101: EIRDKGQRKL VLTNKTVTFS RMIAIFPHWA SQLMVSKESL FVNRFASFND ANRFPAQTHK LPIAMLHSGF AGLIPRESDD MEFIDLICMC HSAFMAEFSL
201: LITPQEQRSF HALYENQKRY TEAARGSGFN SDENRIVYLL RFGLLSSDSL DKMLKVAARV STLSARQEEA SVTRDSFTIV EDRVKIVNDD AKWDELLKKA
301: KRIVDASSSM RSQVAAVDSL DGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)