suba logo
AT5G05630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.908
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amino acid permease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: Amino acid permease family protein (TAIR:AT1G31830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0531eggNOG:KOG1287EMBL:AB005237EMBL:AK119108EMBL:BT008298EMBL:CP002688EnsemblPlants:AT5G05630
EnsemblPlants:AT5G05630.1entrez:830446GeneID:830446Genevisible:Q9FFL1GO:GO:0005886GO:GO:0015171GO:GO:0015203
GO:GO:0015293GO:GO:0015297GO:GO:0015846GO:GO:0016021GO:GO:1902047Gramene:AT5G05630.1hmmpanther:PTHR11785
hmmpanther:PTHR11785:SF338HOGENOM:HOG000239391InParanoid:Q9FFL1InterPro:IPR002293iPTMnet:Q9FFL1KEGG:ath:AT5G05630OMA:CIPPTVL
PANTHER:PTHR11785PaxDb:Q9FFL1Pfam:PF13520Pfam:Q9FFL1PhylomeDB:Q9FFL1PIRSF:PIRSF006060PRIDE:Q9FFL1
PRO:PR:Q9FFL1ProteinModelPortal:Q9FFL1Proteomes:UP000006548RefSeq:NP_196182.1SMR:Q9FFL1STRING:3702.AT5G05630.1TAIR:AT5G05630
TCDB:2.A.3.12.3TMHMM:TMhelixUniGene:At.32976UniProt:Q9FFL1
Coordinates (TAIR10) chr5:+:1682541..1684013
Molecular Weight (calculated) 53696.90 Da
IEP (calculated) 9.54
GRAVY (calculated) 0.61
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MTELSSPNLD SASQKPRIST ENPPPPPPHI SIGVTTGDPA TSPARTVNQI KKITVLPLVF LIFYEVSGGP FGIEDSVKAA GPLLAIVGFI VFPFIWSIPE
101: ALITAEMGTM FPENGGYVVW VTLAMGPYWG FQQGWVKWLS GVIDNALYPI LFLDYLKSGI PILGSGIPRV AAILVLTVAL TYLNYRGLSI VGVAAVLLGV
201: FSILPFVVMS FMSIPKLKPS RWLVVSKKMK GVNWSLYLNT LFWNLNYWDS VSTLTGEVEN PSKTLPRALF YALLLVVFSY IFPVLTGTGA IALDQKLWTD
301: GYFADIGKVI GGVWLGWWIQ AAAATSNMGM FLAEMSSDSF QLLGMAERGM LPEVFAKRSR YRTPWVGILF SASGVIILSW LSFQEIVAAE NLLYCFGMVL
401: EFITFVRLRM KYPAASRPFK IPVGVLGSVL MCIPPTVLIG VIMAFTNLKV ALVSLAAIVI GLVLQPCLKQ VEKKGWLKFS TSSHLPNLME
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)