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AT5G05560.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
nucleus 0.975
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : E3 ubiquitin ligase, putative
Curator
Summary (TAIR10)
Arabidopsis thaliana E3 ubiquitin ligase
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2771 (EMB2771); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15718eggNOG:ENOG410XQ83eggNOG:KOG1858EMBL:AB005241EMBL:CP002688EnsemblPlants:AT5G05560EnsemblPlants:AT5G05560.1
entrez:830439GeneID:830439Genevisible:Q9FFF9GO:GO:0005680GO:GO:0007067GO:GO:0009553GO:GO:0009793
GO:GO:0010252GO:GO:0016567GO:GO:0048481GO:GO:0051301Gramene:AT5G05560.1hmmpanther:PTHR12827HOGENOM:HOG000030452
InParanoid:Q9FFF9IntAct:Q9FFF9InterPro:IPR024990iPTMnet:Q9FFF9KEGG:ath:AT5G05560KO:K03348OMA:INSKHHA
PANTHER:PTHR12827PaxDb:Q9FFF9Pfam:PF12859Pfam:Q9FFF9PhylomeDB:Q9FFF9PRIDE:Q9FFF9PRO:PR:Q9FFF9
ProteinModelPortal:Q9FFF9Proteomes:UP000006548Reactome:R-ATH-174184Reactome:R-ATH-179409RefSeq:NP_196175.1STRING:3702.AT5G05560.1TAIR:AT5G05560
tair10-symbols:EMB2771TMHMM:TMhelixUniGene:At.32985UniPathway:UPA00143UniProt:Q9FFF9
Coordinates (TAIR10) chr5:+:1641452..1654685
Molecular Weight (calculated) 186286.00 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.02
Length 1678 amino acids
Sequence (TAIR10)
(BLAST)
0001: MPPGVRQLTV LGKFKPFGLI AEATDGKSPD DSYQYFLFDP ELTGERDDAD GNDANFSRQR EHELFIRDNC NVRKGYALVE ANFIGYWYNA CWSNLGRGTE
0101: AFLCVLQIAC LTIYNTSGEV VSVPLMRTVK SIWPLPCGLL LEQAGEVNPP SHVPFSPVSP ILGSREMLRQ RKEVGNSSPQ NFHSPVAHDL ISKRDMPCMS
0201: SHLILRDPLE EPGPTYVEER GKLTIMKDYD ERTIWTSDRL PLMTSYNKGK MQHSVWAAEF IESNLEASAS CSSGIVPDAV LSKRVSFRRI WQAKGAKKAA
0301: SKVFLATDNS VPVICFLILE QKKLLSVGLQ TVEINNEILF DVKPDISWSV SAIAAAPVVV TRSQVKIGLL PHLDIIVLSP ENDLFLYSGK QCLCRYVLPS
0401: WLGESIGSGD GESAKTDSGF RNLKITGLSD AVLGSINLSV NHSQIFRCAL TGKPSSSLAN DCIAAIAEGL RSDLYSLFLS LLWGDGHSDL QGSSIHFEWE
0501: ALCNIFLEIC QKPTVVHRKQ PKTASESSWE FLLISKFHKT YSRFHNGITS INRLDLEGIV PFDSKICSEE TLGSSCELMV QSLDCLHAVY ESLKMDNLRK
0601: QDLHHLAVLL CNIAKFLDEK CYLDYYIRDF PRLSTTIGAC TTLSSSRKPP NLFRWLENCL RRGCLSTNFD DLPDLIRRDG CSIVSWARKV VSFYSVLFGD
0701: KPEGRTLSSG VPCNIAPGSY SCNEELTILA MAGERFGLHQ LDLLPSGVSL PLRHALDSCR ESPPADWPAI AYVLLGREDM ALSVFRNFSS SKEFEMQSNT
0801: SLISMSIPYM LHLHPVIVPS SESIGLENTK IEDTNSVDGS VIDGMEHIFN SYTQLRYGRD LRLNEVRRLL CSARPVVVQT AANPTISDQE QQQAFTVPKL
0901: VLAGRLPSQQ NAIVNLDPNI RNIQELKTWP EFHNAVAAGL RLAPLQGKVS RTWIRYNKPG EPNAVHAGLL FGLGLQGYLH VLNLSDIYQY FTQDHESTTV
1001: GLMLGLAASY RGTMQPDIAK ALFFHVPARY QASYTEFEIP TLLQSAALVS VGMLFEGSAH QQTMQLLLGE IGRRSAGDNV LEREGYAVSA GFSLGLVALG
1101: RGGDALGSMD SLVNRLLLYL GAKEERSILV PSLEDHRSAA QITDGSTSNV DITAPGAIIA LTLMYLKTES EVIFSKLSIP QTHYDLECVR PDFIMLRVIA
1201: RNLIMWSRIC PTCDWIQSQV PEVVKNGISQ LRDDMDNMYE VDVEALVQAY VNIVAGACIS LGLRFAGTRD GNARDLLNSY ALYLLNEIKP LSATPGNAFP
1301: RGISKFVDRG TLEMCLYLII ISLSVVMAGS GDLQVFRLLR FLRSRNSADG HANYGTQMAV SLATGFLFLG GGMRTFSTNN GSLAMLLITL YPRLPSGPND
1401: NRCHLQAFRH LYVLATEARW LQTIDVDSGL PVYAPLEVTV KETKLYSETK FCEITPCILP ERAILKRICV CGPRYWPQQI ELVFGLRTLG ESNLIANSHR
1501: ELDSDSVDHL VSTFSSDPSL IAFAQLCCDK SWNNSFDFLI LDLILWSQVA LAYNEAVSTG RLASSGGFVQ SIFLASLRKR CEEVLNCSTE LKINLRNYLT
1601: SEAWPYDKNS KLQKDIIILS WYLKWFNVPS PSIIKAAVEK IKSKSKNSTS AIPLLRLLLP NTHISVIGEI DRVFFPSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)