suba logo
AT5G05540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : small RNA degrading nuclease 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
small RNA degrading nuclease 2 (SDN2); FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 3 (TAIR:AT5G67240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:COG0847eggNOG:KOG2248EMBL:AB005241EMBL:AK118437EMBL:BT009685EMBL:CP002688
EnsemblPlants:AT5G05540EnsemblPlants:AT5G05540.1entrez:830437Gene3D:3.30.420.10GeneID:830437Genevisible:Q9FFG1GO:GO:0003676
GO:GO:0004527GO:GO:0005634hmmpanther:PTHR12801hmmpanther:PTHR12801:SF69HOGENOM:HOG000083886InParanoid:Q9FFG1IntAct:Q9FFG1
InterPro:IPR012337InterPro:IPR013520iPTMnet:Q9FFG1KEGG:ath:AT5G05540KO:K14570OMA:MIAIDCEPaxDb:Q9FFG1
Pfam:PF00929Pfam:Q9FFG1PhylomeDB:Q9FFG1PRIDE:Q9FFG1PRO:PR:Q9FFG1ProteinModelPortal:Q9FFG1Proteomes:UP000006548
RefSeq:NP_001119175.1RefSeq:NP_196173.1SMART:SM00479SMR:Q9FFG1STRING:3702.AT5G05540.1SUPFAM:SSF53098TAIR:AT5G05540
tair10-symbols:SDN2UniGene:At.43773UniProt:Q9FFG1
Coordinates (TAIR10) chr5:+:1636419..1638759
Molecular Weight (calculated) 53185.20 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.51
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDVLATAEG VVLVKLVKVA QKLGLKGENG TWKEFLDFYD KQLGSSSLSD PSKRRKDDLV AFLTTLKKKE DLQLLAKSLK LDNDVFEKFK KKSLDETAEQ
101: RLVRMTLTHD EYPLDYLFPS NAEDWVRTGL GKKKMEPTKI EMIAIDCEMV LCEDGSEAVV RVAAVDRDLK VILDEFVKPN QPVVDYRTFI TGLTAQDLEK
201: ATISVVDIQE KLLMFISEDT ILVGQSLNHD LKVLKVDHAR VIDTSLVFKY NYDGTRRPLR LKRPSLNYLC KCILGYEVQK EGVPHNCVHD AEAAMKLVLA
301: ILDNGAETSV PLSKEMLEAE KSKLYLHRIP CNVPYEELNG VVSRDIPHEV KPSKKQDRHY YSAIVVFKSP EEANQAFENI AGDFGKDSRG LSQKQIFLEP
401: SSSEPRLYVL VRKMVEDDLV GEVIAEENNA SSKKRKRENH SKGTRDRRRC KPLSRRKQRS NVKRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)