suba logo
AT5G05500.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G34700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX1WeggNOG:ENOG410Y42NEMBL:AB005241EMBL:AY086519EMBL:BT026345EMBL:CP002688EnsemblPlants:AT5G05500
EnsemblPlants:AT5G05500.1entrez:830433GeneID:830433GO:GO:0009826GO:GO:0031982GO:GO:0048767Gramene:AT5G05500.1
hmmpanther:PTHR31614hmmpanther:PTHR31614:SF10HOGENOM:HOG000237526KEGG:ath:AT5G05500OMA:EGVVYCQPfam:PF01190PhylomeDB:Q9FFG5
Proteomes:UP000006548RefSeq:NP_568156.1STRING:3702.AT5G05500.1TAIR:AT5G05500TMHMM:TMhelixUniGene:At.27822UniProt:Q9FFG5
Coordinates (TAIR10) chr5:+:1629716..1630267
Molecular Weight (calculated) 20171.20 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.12
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSRALPFSV LVILIATAVL ANAYTPPPPP PTTAYPAVKT VEAAVEGMVY CQSCDKFGSW SLAGAEAIAG AKISIICKNH RQQVSFYKVF RTDSYGHFYG
101: ELKGFKMTPH FLDHPLHSCR AKLVSSPRED CNLFSNINNA LDGAPLRYEE KRLKWTNYEA VIYAAGPLAF RPDHCPATAP PTY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)