AT5G05460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family 85 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family 85 ; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 85 (InterPro:IPR005201), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 85 (TAIR:AT3G11040.1); Has 480 Blast hits to 472 proteins in 209 species: Archae - 0; Bacteria - 262; Metazoa - 108; Fungi - 28; Plants - 47; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1615615..1618771 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76354.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
| Length | 680 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVAPPAPSP PPFDPTKPST PISFPIKTLQ DLKSRSYFDS FHYPFNRSSV PLRRNIGALS DRPRLLVCHD MKGGYVDDKW VQGCGNNAGY AIWDWYLMDV 101: FVYFSHSLVT LPPPCWTNTA HRHGVKVLGT FITEWDEGKA TCKELLATKE SAQMYAERLA ELAAALGFDG WLINIENVID EVQIPNLMVF VSHLTKVMHS 201: SVPGGLVIWY DSVTIDGHLA WQDQLTENNK PFFDICDGIF MNYTWKENYP KASAEIAGDR KYDVYMGIDV FGRGTYGGGQ WTANVALDLL KSSNVSAAIF 301: APGWVYETEQ PPDFYTAQNK WWSLVEKSWG IVQTYPQVLP FYSDFNQGLG SHTSLGGRKL SEAPWYNISC QSLQPFLEFN EGRNSETIQV TVDGREASYN 401: GGGNVSFRGK LKRNAHFTAR LFKPQLQLSA APISIFFSVK SDKRSELSIL LHFSSPSQEK KSMLMVPNES INRFGDMFLP CLLTSKQTTS GWTVHETNLV 501: LDGHTLTEIS AFCSRPDDLT EETNTLEYFA LLGHISIKSQ QKAKVYPLAS SWVIEAHHVK FVPGDSGSKT LSCKLEWRLK HPEEDSVFPK YNVYAENLSS 601: SEYRPRKVME EPRSEKVFLG TAHVDAYYVS EMVVGSDVKG VRFVVQTCGE DGSWQELDAS PNLVVEVERV SSKLCCCGLI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)