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AT5G05450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G71370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-695-MONOMEREC:3.6.4.13eggNOG:ENOG410XNT7eggNOG:KOG0345
EMBL:AB010692EMBL:AJ010469EMBL:CP002688EnsemblPlants:AT5G05450
EnsemblPlants:AT5G05450.1entrez:830428Gene3D:3.40.50.300GeneID:830428
Genevisible:Q9FLB0GO:GO:0003723GO:GO:0004386GO:GO:0005524
Gramene:AT5G05450.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF2HOGENOM:HOG000268803
InParanoid:Q9FLB0InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545
InterPro:IPR014001InterPro:IPR014014InterPro:IPR025313InterPro:IPR027417
iPTMnet:Q9FLB0KEGG:ath:AT5G05450KO:K14809ncoils:Coil
OMA:NMTPVQAPaxDb:Q9FLB0Pfam:PF00270Pfam:PF00271
Pfam:PF13959Pfam:Q9FLB0Pfscan:PS51192Pfscan:PS51194
Pfscan:PS51195PhylomeDB:Q9FLB0PIR:T51344PRIDE:Q9FLB0
PRO:PR:Q9FLB0PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194
PROSITE:PS51195ProteinModelPortal:Q9FLB0Proteomes:UP000006548RefSeq:NP_196164.1
scanprosite:PS00039SMART:SM00487SMART:SM00490SMART:SM01178
SMR:Q9FLB0STRING:3702.AT5G05450.1SUPFAM:SSF52540TAIR:AT5G05450
UniGene:At.23004UniProt:Q9FLB0
Coordinates (TAIR10) chr5:+:1612077..1615195
Molecular Weight (calculated) 66943.00 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.40
Length 593 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSSANINKA LTETRFSDLE PPLSGDIIEA LNQSDFEFCT PVQAATIPLL CSYKDVAVDA ATGSGKTLAF VVPLVEILRR STSFPPKPHQ VMGVIISPTR
101: ELSTQIYNVA QPFVSTLANV NSVLLVGGRE VKADMKIIEE EGCNVLIGTP GRLSDIMERM EILDFRNLEI LILDEADRLL EMGFQRQVNY IISRLPKQRR
201: TGLFSATQTE GVEELAKAGL RNPVRVEVRA KSKSESSQQL TNSKTPSGLH LEYMECEADK KSSQLVDLLI KNSDKKLIVF FMTCASVDYW GLVLSKIPAL
301: KSISLIPIHG DMKQNARDKA LASFTKASSG ALLCTDVAAR GLDIPGIDYV VQYDPPQDPN MFNHRAGRTA RLGRQGRAIV FLLPKEEAYV EFMRIRRVPL
401: EERKCSEDAS DVIPIIRSAA MKDRAVMEKG LKAFVSFVRA YKEHHCSFIF RWKDLEIGKL AMGYGLLYLP SMSEVKQHRL SSEGFTPVEG VKFEEIKFKD
501: KYREKQRQQN LQVRKEKRQE EKKEKGKRKR VDASASNDPK KASRKLTGKQ RQTIQTAEDE EVMDRDYKLM IKVKKGLIKE DEYERLTGDD DLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)