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AT5G05300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB010692EMBL:CP002688EnsemblPlants:AT5G05300EnsemblPlants:AT5G05300.1entrez:830412GeneID:830412Gramene:AT5G05300.1
hmmpanther:PTHR33599hmmpanther:PTHR33599:SF4HOGENOM:HOG000152541KEGG:ath:AT5G05300OMA:CEGEDDHPhylomeDB:Q9FLC4Proteomes:UP000006548
RefSeq:NP_196149.1STRING:3702.AT5G05300.1TAIR:AT5G05300UniGene:At.66724UniGene:At.74332UniProt:Q9FLC4
Coordinates (TAIR10) chr5:-:1570102..1570410
Molecular Weight (calculated) 10555.90 Da
IEP (calculated) 9.72
GRAVY (calculated) 0.45
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MARIGALILV LFISISQLAS FSTARKFPVG IPSVIDGVIF SGEISAVSKK VTVVGCEGED DHLTAGYSSY ITGKFGSLVL NALPKGSVPA SGPSKRINDV
101: KT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)