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AT5G05290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A2
Curator
Summary (TAIR10)
Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A2 (EXPA2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A8 (TAIR:AT2G40610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTV2eggNOG:ENOG410ZS8QEMBL:AY064035EnsemblPlants:AT5G05290EnsemblPlants:AT5G05290.1entrez:830411ExpressionAtlas:Q541G8
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:830411GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
Gramene:AT5G05290.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF31InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118
InterPro:IPR009009KEGG:ath:AT5G05290OMA:FELQCEDPaxDb:Q541G8Pfam:PF01357Pfam:PF03330Pfam:Q38866
Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q541G8PRINTS:PR01225PRINTS:PR01226PROSITE:PS50842PROSITE:PS50843
ProteinModelPortal:Q541G8RefSeq:NP_196148.1SMART:SM00837SMR:Q541G8STRING:3702.AT5G05290.1SUPFAM:SSF49590SUPFAM:SSF50685
TAIR:AT5G05290tair10-symbols:ATEXP2tair10-symbols:ATEXPA2tair10-symbols:ATHEXP ALPHA 1.12tair10-symbols:EXP2tair10-symbols:EXPA2UniGene:At.9135
UniProt:Q38866UniProt:Q541G8
Coordinates (TAIR10) chr5:+:1568752..1569712
Molecular Weight (calculated) 27750.30 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.21
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLTEYSHIL FLSLCTLNFC LYSINSDDNG GWERGHATFY GGADASGTMG GACGYGNLHS QGYGLQTAAL STALFNSGQK CGACFELQCE DDPEWCIPGS
101: IIVSATNFCP PNFALANDNG GWCNPPLKHF DLAEPAFLQI AQYRAGIVPV AFRRVPCEKG GGIRFTINGN PYFDLVLITN VGGAGDIRAV SLKGSKTDQW
201: QSMSRNWGQN WQSNTYLRGQ SLSFQVTDSD GRTVVSYDVV PHDWQFGQTF EGGQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)