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AT5G05250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.517
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYSMeggNOG:ENOG410YTJHEMBL:AB010692EMBL:AY054291
EMBL:CP002688EnsemblPlants:AT5G05250EnsemblPlants:AT5G05250.1entrez:830407
GeneID:830407Gramene:AT5G05250.1hmmpanther:PTHR35127hmmpanther:PTHR35127:SF1
HOGENOM:HOG000152542KEGG:ath:AT5G05250OMA:LGMRCTHPhylomeDB:Q9FLC9
Proteomes:UP000006548RefSeq:NP_568152.1STRING:3702.AT5G05250.1TAIR:AT5G05250
UniGene:At.26381UniProt:Q9FLC9
Coordinates (TAIR10) chr5:-:1557116..1557835
Molecular Weight (calculated) 25864.60 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.36
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYAKIGYGG SYLVQRGILE YPCGSDHNAR LISSSFPINL GGNRRSSIGT ISASIGEAVT EIEKQRGGRR SGGRSRGDRW EVEAEREKLD RWMKESVTEI
101: VKNLSEAPLL VHLYTGDKEE GTVVVMKAEE WAAVKGRWER GEAEMPEGIV FVEQLGAAEE SCGCGFDGGD GTRAWGLVVQ GRGVECGPVC YLLKTTRVGS
201: GSGSGSGLGM RCTHFCLAKV SSFRETSESQ LRNCWLVGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)