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AT5G05210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Surfeit locus protein 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Surfeit locus protein 6; CONTAINS InterPro DOMAIN/s: Surfeit locus 6 (InterPro:IPR007019); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 6 (TAIR:AT2G27750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111G0YeggNOG:KOG2885EMBL:AB010692EMBL:AB018111EMBL:AY039882EMBL:AY143894EMBL:CP002688
EnsemblPlants:AT5G05210EnsemblPlants:AT5G05210.1entrez:830403ExpressionAtlas:Q9FLD3GeneID:830403Gramene:AT5G05210.1hmmpanther:PTHR14369
hmmpanther:PTHR14369:SF0HOGENOM:HOG000241387InterPro:IPR007019InterPro:IPR029188InterPro:IPR029190ncoils:CoilOMA:KSSKEWA
PANTHER:PTHR14369Pfam:PF04935Pfam:PF15459PhylomeDB:Q9FLD3Proteomes:UP000006548RefSeq:NP_196140.1STRING:3702.AT5G05210.1
TAIR:AT5G05210UniGene:At.25850UniProt:Q9FLD3
Coordinates (TAIR10) chr5:+:1548198..1549534
Molecular Weight (calculated) 45144.60 Da
IEP (calculated) 10.53
GRAVY (calculated) -1.63
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKTRGTDMT KKKGKHVSEM DFKTHQHTEF FDKLIELTPA RFYLPDETER KWYPGLSKAQ KARAKKKTND NLKKAKRDKL DPEKSALTTL DLLKEKIEKE
101: RLASQKQKLK KKHADLREQK LEQEKSGTEL PDDDSKKETD NNRLNDDDSK EETDNNRQKD DRSVTYEELR ERLHRKIDEL KGGRGGSDRP RSNERRKKNL
201: PNKRKRDTVS EEKTVEEIKS ADKGKGKLDV EEAAKDLTFG YVKIDDDEEH GKEKKKRRLS KARELERAMK LEAAKKDPEK GDVIAKKHSW KAATSRAAGI
301: KVHDDPKLLK QSIHKDKKRQ EKNAEKWKER IEGQQKFKVE KQQKRSGNIA DRIEQNKMRK IAKREKKLLR PGFEGRKEGF INEGGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)